BAC Information

Click to search

BAC

Clone NameMSMg01-159H24
Chromosome3 (Build37)
Map Location 25,916,464 - 25,916,777
singlet/doubletsinglet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159H24.T7 (MSMg01no159_h24.b1)MSMg01-159H24.TJ (MSMg01no159_h24.g1)
ACCAG359418AG359419
length739742
length of high quality
(start - end)
321 (45 - 365)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no159_h24.b1 PHD_FILE: MSMg01no159_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:14 2005CHROMAT_FILE: MSMg01no159_h24.g1 PHD_FILE: MSMg01no159_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGTCTTTGGCCTTTATTGTAGTCTATATCACTGGCCCTTCAGTTT
GCCTTTGGTATGTGGTTTCAACAACCAAAACTATTTGTTTACCTTCATTT
ATGTTAGAGGAAGGTATCAGTTTCCCTCAGCCTTCCCGAATCTTCACTGT
TAGCAGTCCTTCCTGTGAGAACGTCTGGCTTAAAGTTTCTGTAGTGTGTA
TTCATGATGATATATCCACTGACTCTTTGGGGTCAGGTTTTGGTTTCAAT
ATTCAAAAGGAATTTGTTTAATTATGGTAACTGTGTCTAACATATGTATG
ATCCACAGGTATTTTCTGACTCGCCGCCCATTAATTTTTGATAGACACTA
AATCTGTGGTATGCGCCCGCAAATTGATATTCCTATAACCCACCAACAAA
GTCAACTGAGAAATATTTTAGAAAATTCATGAGCTTAGAATCAAAGAATT
TGCCACATAATAATTGTGTGACTGAGAATATTCATCATCATTGATAGGCC
TCAGTTTAGTTCACCTGCTAAAGGAAAGACATCACAGATTGGCAAGAAAG
AGTAAGAAAGATAGGATCAAGAAAGAGTGCTCAGTGGTTAGACAGCTTTC
TACCTATTCAGAAGCACGCCATGGTCCTATTGTACCACTGGCATTTCTGA
ACACAAATGTGTATACCTTCAGCTCCAGGGGATCTGTCC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGCTCAACATCCTTAATCACCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAATTCAGGTGACAGTAGATGCTAGCCAGGATGTGGAGAAAGAGGAACG
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCG
CAGTACCTCTCCTGTTTTTATACCCCCACCACGTTCCAACTTGTAATAAG
GACACATGCTCCACTATGTCCATAGCAGCCTTATTTATAATAGCCTTAAG
CTGGAAAGAACCCAGATGCCCCTTAAAAGAGGAATGGATACAGAAAATGT
GTTACATTTACACAATGGAGTACTACTCAGCTATTAGAAAGAATGAATTT
ATGAAATTCCTAGGCAAATGGATGGACCTGGAGGACATCATCCTGAGTGA
GGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCT
AAATGCATGAAACTCAAGAAGAACAAAGACCAAAGTGTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_h24.b1 MSMg01no159_h24.b1 CHROMAT_FILE:
MSMg01no159_h24.b1 PHD_FILE: MSMg01no159_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:14 2005
         (321 letters)



>mm_chr3_25916260_25916980
          Length = 721

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtctttggcctttattgtagtctatatcactggcccttcagtttgcctttgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcatgtctttggcctttattgtagtctatatcactggcccttcagtttgcctttgg 459

                                                                       
Query: 65  tatgtggtttcaacaaccaaaactatttgtttaccttcatttatgttagaggaaggtatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tatgtggtttcaacaaccaaaactatttgtttaccttcatttatgttagaggaaggtatc 399

                                                                       
Query: 125 agtttccctcagccttcccgaatcttcactgttagcagtccttcctgtgagaacgtctgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agtttccctcagccttcccgaatcttcactgttagcagtccttcctgtgagaacgtctgg 339

                                                                       
Query: 185 cttaaagtttctgtagtgtgtattcatgatgatatatccactgactctttggggtcaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cttaaagtttctgtagtgtgtattcatgatgatatatccactgactctttggggtcaggt 279

                                                                       
Query: 245 tttggtttcaatattcaaaaggaatttgtttaattatggtaactgtgtctaacatatgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tttggtttcaatattcaaaaggaatttgtttaattatggtaactgtgtctaacatatgta 219

                         
Query: 305 tgatccacaggtat 318
           ||||||||||||||
Sbjct: 218 tgatccacaggtat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)