BAC Information

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BAC

Clone NameMSMg01-159M15
Chromosome3 (Build37)
Map Location 29,312,733 - 29,313,007
singlet/doubletsinglet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159M15.T7 (MSMg01no159_m15.b1)MSMg01-159M15.TJ (MSMg01no159_m15.g1)
ACCAG359633AG359634
length727734
length of high quality
(start - end)
320 (48 - 367)279 (83 - 361)
definitionCHROMAT_FILE: MSMg01no159_m15.b1 PHD_FILE: MSMg01no159_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:34 2005CHROMAT_FILE: MSMg01no159_m15.g1 PHD_FILE: MSMg01no159_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATCCCTATTCCTTCCCCTGCTCAGTCATTGGATGATCAGCTT
CTTGACCAATCAGGGAATAATTAGAGAACAATATTTACATAATATTGAGC
ATTTGAATAATACAAGGAAAATCTTTTAAAAGTGTGCATTAACATTATGC
CTATAATCATATATCTGGCATATCAGATATTTACATTATGATTCATAACA
ATAACAAAATTATATTTATGGAGTAGCAATAAAATAATTTTATGTTTGGG
GGTCACAACATGAGGAATTGGCTCAAAGAGTTGCACCATTAGGAGGGTTG
GGAATCACAGTTCTAATGAACCCTGACCACCACAAAGGCAAACAATGCAT
ATTTTGATTTTCTTTCGCCACGAAGAAATCAAGTTGAAGATACAGAAGCA
TTCAGCCCATATCATAATGTGGCTGTGCCACTCACTACTCTATTCTTCTC
CCAAAGGGATCAAGTACAGAGCTAATGAACCAGATGTCATTATTTTGCTT
ATGTTGATTCTGCATTACATTATGCAGGGTGCAGGATGGGTATTCTTAAC
ATTATATCAGAAACACACACATATACACAGACACAATTACATATGTACAC
ACATTAAACCCCTAGGTGCACACTTGCGCACACTCACACAAAGACTCACA
GGCACTCACTCGTGTACCCTCTTAAAC
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGGATTTGCATGGTG
AAAAGAGAATTGTCACAAATTGTCTTCTGATCTCTCCACACATGAGCAAG
TAAACAGATACATGTGCATATGTGTATGCACACACACTCATGTGCACATG
CACATGTGCACACACACACACAAGCTTGCACACATTATCACTAAGCACAC
ATAAGTGTGCACAAGCATGCATGTATAATTTATTTTTAAAACAAACATGT
GATGCTGAAATCTTGTTCTGGTGCTGAACAAATTGTGATGGATTACTCGA
GCAATGAGTGAATTGGTGAATTACCCCCAGCCCCACTTTCTGAAGTTTAT
AAATGAAGGAACTTCATACCCCCCCCTAAACAAAAACAATTCAAGGTGAC
CTTTTGTGGGGTATATCTGAGGAAAGGGGTTCTTACGTAAAGGTTCAGTA
TACAGTGAAGTAGGCGAACAGCACAGGGTTTGGATAACTGTCCTACCTAA
AAGCTGCCTGGCTACTCTTGCATTCAAGACAACAGAGCATTGAACTGTTT
TCTGTACTCATGCTAATTAGATTTTAATAAAATCCGAAATTCAATAATAC
ATATTTTTTTTAAATAAACCCTCAAAAGTTTCTTTGTTTAAAAAATTATA
TTCTGCCCCGCCTGAATTTAAAATTACTGTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_m15.g1 MSMg01no159_m15.g1 CHROMAT_FILE:
MSMg01no159_m15.g1 PHD_FILE: MSMg01no159_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:34 2005
         (279 letters)



>mm_chr3_29312531_29313207
          Length = 677

 Score =  462 bits (239), Expect = e-135
 Identities = 268/279 (96%), Gaps = 4/279 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaggatttgcatggtgaaaagagaattgtcacaaattgtcttctgatctctccacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cccaggatttgcatggtgaaaagagaattgtcacaaattgtcttctgatctctccacaca 262

                                                                       
Query: 61  tgagcaagtaaacagatacatgtgcatatgtgtatgcacacacactcatgtgcacatgca 120
           |||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||
Sbjct: 263 tgagcaagtaaacagatacacgtgcatatttgcatacacacacactcatgtgcacatgca 322

                                                                       
Query: 121 catgtgcacacacacacacaagcttgcacacattatcactaagcacacataagtgtgcac 180
           |||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 catgt--acacacacacacaagcttgcacacattatcattaagcacacataagtgtgcac 380

                                                                       
Query: 181 aagcatgcatgtataatttatttttaaaacaaacatgtgatgctgaaatcttgttctggt 240
           |||||||| ||||||||||||||||||||||||||||  ||||||||| |||||||||||
Sbjct: 381 aagcatgcgtgtataatttatttttaaaacaaacatg--atgctgaaaccttgttctggt 438

                                                  
Query: 241 gctgaacaaattgtgatggattactcgagcaatgagtga 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gctgaacaaattgtgatggattactcgagcaatgagtga 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 677
Length adjustment: 9
Effective length of query: 270
Effective length of database: 668
Effective search space:   180360
Effective search space used:   180360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)