BAC Information

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BAC

Clone NameMSMg01-159N15
Chromosome3 (Build37)
Map Location 45,371,808 - 45,372,093
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159N15.T7 (MSMg01no159_n15.b1)MSMg01-159N15.TJ (MSMg01no159_n15.g1)
ACCAG359679AG359680
length766739
length of high quality
(start - end)
46 (69 - 114)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no159_n15.b1 PHD_FILE: MSMg01no159_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:39 2005CHROMAT_FILE: MSMg01no159_n15.g1 PHD_FILE: MSMg01no159_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAACCTTCCCACCAAGACTACATAATAACACTTTCATAATAGTGA
TGATGATGACGATGGTTTTCACCCTGATGATGATGAGGAGGAGGAGNNNN
NNNTTCCNNNTNNNTNNNNTNNNNNNNTNNTNTTTTTTTTCTTTTTTTTT
TTNTTTTTCTTTTTTTTTTTTCCCTTCTCTCCCCCTCCTTCCCTCCCCCC
TCCCCCCTTCCCCCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCTCCCCTTCTCTTCTCTTTTTTCTCCCCCCCCTCCCCTCCCCCCCCC
CCTTCTCTTTTTTTTTTTCCCCCCCCCCCCCCCCCTTTTTCTCCCTTCCC
CCCTTCCCCTTTCTCCCCCCCCCCCCATACTATATTTTCCTCCCCCCCCC
CCCTCCCCCTCCCCCCCCCCTCCCCTCCCCCTCTCCTCTCCCCTCCTTCT
CTCCCCCCCCCCCCCCCCCCCCTTTCCCCTCCCCCCCCCCCCCCCCCCCT
CTCCCTTCCCTCCCTCCCCCCCCCCCCCCCCCCCCTCCTTCCTCCCCCCC
CCCCCCCTCCCTTTTCCTTTCCCTCCCCCTCCCTTCTTCCCTTCCCTTCC
CCCCTTCCCTCTCTCCCTTTTCCCCTCCCCCCCCCCCCCTCCCCCCCCCC
TCCCTTCTCTCCCTTTCCCCCCCTTCTTTCCCTCCCTCCCCCTCCCCCCT
CCCCCTCCCCTCTCCT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTTTAATTCTTGATATTTATAAAAATGT
TTGCCTACATTACTCTCTCCCTAATGTGTTGTACCTATAATTATAAAAAA
TCTCTTCAATCTTAAAAACATTCTGATACTGCTTTAAGCAGATTTATATC
ACAGAGGGGCTCCAAACATTTTATATTTTTAGTGTATTCAAAAAAATGCA
CATATCTAAGCATAGAGATGTATTATATTTTCTAATATATATAGTGTTCA
GCAGATATATTTATGTCCAGTTACTGTCTAATATTAAACTACTAATAAGT
ATATAATTGATGTTTTCCCACCCTTCCACTAATTTAATGTACAATAATTT
TGTGCAGAGACTTTAGAGATCGTATAGGGTCTCTTTAAAGACCTTTTGGG
AAAATAGGTGATTATTACCTGGGAAAGTGACTATGTGTATTACAGGAGAA
TAGAGAAAATAAGGACAGATTTATCCACTGAGGCCAAGAAAACCAAGCAA
AACTGCAGTGATTCTCAATGTGGAGTAAAAGAATGAAATGCGTACCAGTG
GGGCATAGGGAACCAGAGGTAGCCACTAGAAAGTCTCAGATGCCAAGGAA
GCAAGAGATTCCCAGGACCCAAATGGGATGACATTAGCTGAAATCCGGTA
GTTAGGCATGACCTCCCGTGTAGACTATCCTCAGTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_n15.g1 MSMg01no159_n15.g1 CHROMAT_FILE:
MSMg01no159_n15.g1 PHD_FILE: MSMg01no159_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:39 2005
         (289 letters)



>mm_chr3_45371608_45372297
          Length = 690

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%), Gaps = 1/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttaattcttgatatttataaaaatgtttgcctacattactctctccctaatgtgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttaattcttgatatttataaaaatgtttgcctacattactctctccctaatgtgttg 260

                                                                       
Query: 61  tacctataattataaaaaa-tctcttcaatcttaaaaacattctgatactgctttaagca 119
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacctataattataaaaaaatctcttcaatcttaaaaacattctgatactgctttaagca 320

                                                                       
Query: 120 gatttatatcacagaggggctccaaacattttatatttttagtgtattcaaaaaaatgca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gatttatatcacagaggggctccaaacattttatatttttagtgtattcaaaaaaataca 380

                                                                       
Query: 180 catatctaagcatagagatgtattatattttctaatatatatagtgttcagcagatatat 239
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 381 catatctaagcatagagatgtattatatttcctaatatatatagtgttcagtagatatat 440

                                                         
Query: 240 ttatgtccagttactgtctaatattaaactactaataagtatataa 285
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatgtccagttactgtctaatattaaactactaataagtatataa 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)