TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATAATAAAAGCAATCTACAGCAAACCAG
TAGCGAACATCAAAGTAAATGGAGAGAAGCTAGAAGCAATCCCACTAAAA
TCAGGAACTAGACAAGGCTGCCCACTTTCACCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAAAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCT
GATAAACAGCTTCTGTGAAGTACCTGCACATAAAATTAACTCAAACAAGT
CAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACACTTGTCAATAGTCACAAATAATATAAAATATCTTGGCGT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTC
TGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGTATCAACATTGTAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACACAATTCTTCA
ACGAATTAGAAGGAGCAATTTGCAAATTCC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAACATGGCATAAAAATCACTT
ATAGAAAGAAAGGGTTCACAAAGTTCATTTCATTAAAATTAAGCAGCTTT
GTTCTTTTGATTTGCATTTTGAAGACAGTAAAAAGTCAAATCACAGAGTG
GGGTGAACTTGCCACCGTTTGAAACAATGCATTCAGAATATATAAAGAAT
CCCTACAAATTACTTTAAAAAGCTAGTCAGTGGAAGAGAAAAAAAAAAAA
GAAAGAAAAACCAAGAAAATGAGCTACTAATTCTAAAAGTAAGGGGGCCC
AAATAATCAATGGGCACTTAAATTGGCATTTAAACTCTTCTGAAACAGAG
AAGAGTGAGTGAGAACCCAAGGAGAAACCTTCAGCTACCCAGTTTAGGGG
TAGTTTGGAAGTCTTGAGCCCCAACGGAAAAACAATAGGCACATTTAAAA
CCCAGCAGGAGAGAACACTGGCAGAAACATGTTGGGAAAATGGTTTGATT
TTTTATTTAGCAAATGCAGATGTGCACAATCAGAAATTCTTTTCCCAGAG
ATCTGGCTTATTGTTGCAATGCATACTTATGAGCATGGTGGCTCACTCAA
GAGTGCTGATCAAAATGGCCCCAGATGGATGCTGCCCAAACATCTATCCA
CAGCAAAATGAATAGGCAAATTGTTTATTCA

Query= MSMg01no159_p04.g1 MSMg01no159_p04.g1 CHROMAT_FILE:
MSMg01no159_p04.g1 PHD_FILE: MSMg01no159_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:46 2005
         (655 letters)



>mm_chr3_115213906_115214960
          Length = 1055

 Score = 1174 bits (607), Expect = 0.0
 Identities = 620/625 (99%), Gaps = 2/625 (0%)
 Strand = Plus / Minus

                                                                        
Query: 33   aaagggttcacaaagttcatttcattaaaattaagcagctttgttcttttgatttgcatt 92
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 aaagggttcacaaagttcatttcattaaaattaagcagctttgttcttttgatttgcatt 983

                                                                        
Query: 93   ttgaagacagtaaaaagtcaaatcacagagtggggtgaacttgccaccgtttgaaacaat 152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982  ttgaagacagtaaaaagtcaaatcacagagtggggtgaacttgccaccgtttgaaacaat 923

                                                                        
Query: 153  gcattcagaatatataaagaatccctacaaattactttaaaaagctagtcagtggaagag 212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922  gcattcagaatatataaagaatccctacaaattactttaaaaagctagtcagtggaagag 863

                                                                        
Query: 213  --aaaaaaaaaaaagaaagaaaaaccaagaaaatgagctactaattctaaaagtaagggg 270
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862  aaaaaaaaaaaaaagaaagaaaaaccaagaaaatgagctactaattctaaaagtaagggg 803

                                                                        
Query: 271  gcccaaataatcaatgggcacttaaattggcatttaaactcttctgaaacagagaagagt 330
            ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 802  gcccaaataatcaataggcacttaaattggtatttaaactcttctgaaacagagaagagt 743

                                                                        
Query: 331  gagtgagaacccaaggagaaaccttcagctacccagtttaggggtagtttggaagtcttg 390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742  gagtgagaacccaaggagaaaccttcagctacccagtttaggggtagtttggaagtcttg 683

                                                                        
Query: 391  agccccaacggaaaaacaataggcacatttaaaacccagcaggagagaacactggcagaa 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682  agccccaacggaaaaacaataggcacatttaaaacccagcaggagagaacactggcagaa 623

                                                                        
Query: 451  acatgttgggaaaatggtttgattttttatttagcaaatgcagatgtgcacaatcagaaa 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622  acatgttgggaaaatggtttgattttttatttagcaaatgcagatgtgcacaatcagaaa 563

                                                                        
Query: 511  ttcttttcccagagatctggcttattgttgcaatgcatacttatgagcatggtggctcac 570
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 562  ttcttttcccagagatctggcttattgttgcgatgcatacttatgagcatggtggctcac 503

                                                                        
Query: 571  tcaagagtgctgatcaaaatggccccagatggatgctgcccaaacatctatccacagcaa 630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502  tcaagagtgctgatcaaaatggccccagatggatgctgcccaaacatctatccacagcaa 443

                                     
Query: 631  aatgaataggcaaattgtttattca 655
            |||||||||||||||||||||||||
Sbjct: 442  aatgaataggcaaattgtttattca 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)