BAC Information

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BAC

Clone NameMSMg01-160E08
Chromosome3 (Build37)
Map Location 66,874,696 - 66,875,006
singlet/doubletsinglet
Overlap geneRsrc1
Upstream geneVeph1, Tpi-rs2, Ptx3, LOC625115, Shox2
Downstream geneMlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160E08.T7 (MSMg01no160_e08.b1)MSMg01-160E08.TJ (MSMg01no160_e08.g1)
ACCAG359987AG359988
length746776
length of high quality
(start - end)
316 (36 - 351)298 (77 - 374)
definitionCHROMAT_FILE: MSMg01no160_e08.b1 PHD_FILE: MSMg01no160_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:11 2005CHROMAT_FILE: MSMg01no160_e08.g1 PHD_FILE: MSMg01no160_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCT
AGTTTTACAGTTTTCCACATGTTTTCTTTCACCATTTATGATTTTTTTTC
AAAGCAGAGCTATAAGGAGTTAAATCACTTTAGCATGCAGCAAAACAGTT
CCCATTCAAACAATAAACGCCGTTTTAAAAAGCCTTTAGATCTTCTGTCA
CTTCATAAATATAAATGTATAAAAACGTTATGCAGTTGTAGTGCCCACCT
GCTAATTAAATGCAGATTTCCTCAAACTTGTTTAAAATCTGTCTATTTGT
TTCAACTCTTTCTCTGTTCAGAGTACATATGGCCCTTGTGAAACTAATTA
TTCTTATTCACCACCCCGCCCCCATTTAGTGCAACTAATTTTATTCAATA
TTTTACCCCCCACTTGATTAACAGAGAAGAAATTAGCAAATTAACACGTA
TTGTACAGTAACTGAATGTTCTTTTATGGTTACGCTCAGATTTAACAGGC
GAGCCGGGCACTGATAGCATAAAGGCACTTCTAGGGGGCTTGGTAGGAAA
GTTATTGGAGGAGCTTGATTATCCAGCGTGAAATTTTAGGAAGACTGACG
AGTGACGCCAAGCATCTGTGTGTCCTGTATCTTAAACATGAGAAGCAGAC
TGGAAAGCAATAGCTTTTTCACAGAACTCTGGTAACATATGGGCTTTAAC
TGGAACATAAAAACCCCTTGAACAACCTTTGAACTTTGACTATATG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATACTA
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCGAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATAAATTTAATTTATAAATATTACATAAA
ATTCATATCTTTAAGTAACAACCAATACTCAGGATGGGCTTTCTTTCTTT
AGCCTTGTTTGTTATAATGCTTTCTCTACCTTTCTTGGTGATATCACCAT
CTGGATGGGTAGCTCCCCCAACACTTGATCACTTTCATAACCTATGTACT
AGCAAAGTCATAAATGATTTTTTTTTAGGATTTTATGTTCTCAAGTTGTG
CATGATTGATTCTCTCTCACTTATTATATTTTCTTCTTTTTTTCTACTTA
TCTTTATAATATTACTCTTTTATTATTTATTATATTTTTATCTCACCTCC
TCTTTTTATTTCTTCATTTTAATTGTTTACTACTCTTATACTCTTACTCT
TTTTTATTTAACTCCCCCAATTACTTAATCCTCTTCTCTTCTTCTTTCTC
CTATACTTTCTTCTTCCCTCTCCTACAACTATATCATCCCACCCTCTACC
CTTTTTCTTCTTATATACTTTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_e08.b1 MSMg01no160_e08.b1 CHROMAT_FILE:
MSMg01no160_e08.b1 PHD_FILE: MSMg01no160_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:11 2005
         (316 letters)



>mm_chr3_66874492_66875206
          Length = 715

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%), Gaps = 1/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctagttttacagttttccacatgttttctttcaccatttatgatttttttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 205 gaattctttctagttttacagttttccacatgttttctttcaccatttatgattttttt- 263

                                                                       
Query: 65  caaagcagagctataaggagttaaatcactttagcatgcagcaaaacagttcccattcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaagcagagctataaggagttaaatcactttagcatgcagcaaaacagttcccattcaa 323

                                                                       
Query: 125 acaataaacgccgttttaaaaagcctttagatcttctgtcacttcataaatataaatgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acaataaacgccgttttaaaaagcctttagatcttctgtcacttcataaatataaatgta 383

                                                                       
Query: 185 taaaaacgttatgcagttgtagtgcccacctgctaattaaatgcagatttcctcaaactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaaaacgttatgcagttgtagtgcccacctgctaattaaatgcagatttcctcaaactt 443

                                                                       
Query: 245 gtttaaaatctgtctatttgtttcaactctttctctgttcagagtacatatggcccttgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtttaaaatctgtctatttgtttcaactctttctctgttcagagtacatatggcccttgt 503

                       
Query: 305 gaaactaattat 316
           ||||||||||||
Sbjct: 504 gaaactaattat 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 715
Length adjustment: 9
Effective length of query: 307
Effective length of database: 706
Effective search space:   216742
Effective search space used:   216742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)