BAC Information

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BAC

Clone NameMSMg01-160E20
Chromosome3 (Build37)
Map Location 62,030,602 - 62,030,937
singlet/doubletsinglet
Overlap genenone
Upstream geneRap2b, LOC666891, LOC669910, LOC676965
Downstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160E20.T7 (MSMg01no160_e20.b1)MSMg01-160E20.TJ (MSMg01no160_e20.g1)
ACCAG360011AG360012
length712717
length of high quality
(start - end)
219 (118 - 336)338 (77 - 414)
definitionCHROMAT_FILE: MSMg01no160_e20.b1 PHD_FILE: MSMg01no160_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:13 2005CHROMAT_FILE: MSMg01no160_e20.g1 PHD_FILE: MSMg01no160_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGT
TTTCAATCACTGTGTAATACTCCATTGTGTAAATATACATTTTCTGTATC
CATTCTTCTGCTGAAAGACATCTGGGTTTGTCCAGCTTTTGGCTATTATA
AATAAGGCTGCTATGAACATAGTGGAGCATGTGTTCTTGTTATATGTTGA
AGCATCTTTTGGGTATATGGCCAGGAGTGGTATAGCTGGGTCCTCAGGTA
GTACTATGTCCAATTTTCTGAGGAACCACCAGACTGATTTCCAGAGCAGC
TGTACTTTTTTGCAGTCCCACCAATAATGGAGGAGNGNTCCTCTTTCTCC
ACTTCNTTNACAANANCCTGCTGTCACCTGCGGTTTTTATCTTAACCATT
CCCCACCCCAAAGAGAAAAAATCTCAGGGTTGTTTTGATTTGTATTTCCC
TAATGACTAAGGATGTTGAACATTTTTCTAAGTGTTTCTCATCCATTTGA
GATTCCTTGGTTAAGAATTCTCTATTTAGCTCTCTACTCTCCTTTTTTTT
GTTATAAATAGGTATTTTTCTTCCTCTTCCGTCCCCGTTTCTTTTTTCCT
CCCCTTCTCATGCTTCCTTCTCCTTTCGCCCCACTTTCCTTTTCTTTTTC
CTTTTTTTTTTTTCTTACTTATTTTGTCTTTTCTACCCCCTCTCATTTTC
TTTCTTTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTCCCAGCAATAGTGGCTCTCA
ATGATCTGTAATGGGATCCAGTGCCTTCTTCAAATGTATCTGAAGACAGC
TACAATGTACTCATATTCATTAAATAAACGAATAAGTAAATAAATAAATT
ATTCTTTAAAAAATGTGGAGGTGCAAATGGCTTACTGCTAACTGGTCTCC
CTTCCTGATATTTAGTTAAAACCCTAAAATATCTTTCTTCTCTCCTCTGA
TACTGCTCTGATTGTATAAAGTTTACAATTTTGCAGATGTGAAAAAAATG
TATTTTCTGACTTTTCTATTGCAAAACTAGTATAATCACATCACAGAGAT
TTTTTGGGTGTGCCACAAAAGGCAGAACTTGTGTGTTGTAACCACTCTTG
GGTACTTGTGAAGGAGCCTTTAATCACCTCAGCAGGGTACCAACCACAGA
TCAAAGAGACAATTCAACCTAATCTTGTTTGGTGGACCAATGAGTTTTTC
TGGATTATTTCTGGAGCTCAGGTGAGTCTGATGGCTGGATCACTGTCAAG
CTTGTCCCATCTAGGATGACGACGCACAAAGCCTGCCATACCTATATCTC
CTGTTCAAAGTGATTCGTGATGTTAATGCGTGCTTCTATGCCTCCCTCCA
TGTTACTCTTAATACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_e20.g1 MSMg01no160_e20.g1 CHROMAT_FILE:
MSMg01no160_e20.g1 PHD_FILE: MSMg01no160_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:13 2005
         (338 letters)



>mm_chr3_62030265_62031002
          Length = 738

 Score =  603 bits (312), Expect = e-177
 Identities = 330/336 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcccagcaatagtggctctcaatgatctgtaatgggatccagtgccttcttcaaatg 60
           ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 673 aattcccagcaatggtggctctcaacgatctgtaatgggatccagtgccttcttcaaatg 614

                                                                       
Query: 61  tatctgaagacagctacaatgtactcatattcattaaataaacgaataagtaaataaata 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 613 tatctgaagacagctacaatgtactcatattcattaaataaatgaataagtaaataaata 554

                                                                       
Query: 121 aattattctttaaaaaatgtggaggtgcaaatggcttactgctaactggtctcccttcct 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aattattctgtaaaaaatgtggaggtgcaaatggcttactgctaactggtctcccttcct 494

                                                                       
Query: 181 gatatttagttaaaaccctaaaatatctttcttctctcctctgatactgctctgattgta 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 493 gatatttagttaaaaccctaaaatatctttcttctctcctttgatactgctctgattgta 434

                                                                       
Query: 241 taaagtttacaattttgcagatgtgaaaaaaatgtattttctgacttttctattgcaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 433 taaagtttacaattttgcagatgtgaaaaaaatgtattttctgacttttctattgtaaaa 374

                                               
Query: 301 ctagtataatcacatcacagagattttttgggtgtg 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctagtataatcacatcacagagattttttgggtgtg 338


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)