BAC Information

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BAC

Clone NameMSMg01-160J06
Chromosome3 (Build37)
Map Location 42,631,466 - 42,631,753
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666031, LOC100039204
Downstream geneLOC100039219, LOC677788, LOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160J06.T7 (MSMg01no160_j06.b1)MSMg01-160J06.TJ (MSMg01no160_j06.g1)
ACCAG360212AG360213
length747740
length of high quality
(start - end)
324 (47 - 370)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no160_j06.b1 PHD_FILE: MSMg01no160_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:34 2005CHROMAT_FILE: MSMg01no160_j06.g1 PHD_FILE: MSMg01no160_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTT
CTGTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGCGTCTCTGGCTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
TCTACTTGTCTGTCTCTATACCAGCACCATGCTGTTTTTATCACAATTGC
CCTGTAGTAAAGCTTTAATTCACGGCCGCCGATTCCACCTGAGGTTCTTT
TACCCTTGAAAACATTCTTTGTTATCCTTGTTTTTTTATATCTCTAG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTACCAATGTCACTCTTCTGGAA
GAGTATTCAAGGTTAAAGAAATAATAAGTGTTTAAACAAATAAAAATAGC
TACCTTGGTTTGATTATTTGAATACATACATATATTTGATTATATACATG
TATATCTAATAAATGATATATAATATTCACATCACAAATAAGCATATTCA
TTAAGTTTTGTGATAGCTAACCTTAGTTGGCAAATTCACTATATTTTGAA
TCAACTAAGCCACATATAAACGTAGAGACATCATGATAAATAAGTGCACA
GCATGCATCAATTTTTTAGTGACCCCCCCTTCAAATGCCTCATAATGAAA
AAATATATTTAGCCCATCTTCAAAGGTACCCATAGACTTAGTATTACCAT
CACTCAAAGTTCAAGTTCAATATCTGCTCTTAGACTCAAGGCAAACATTT
GCTTGAGCCACTGCAAAATTAAGAAATCATATAACAAATTTTCAATGTAA
AATATCACAGGGAGAAGCATTTCCAATCTGAAAGGAAGAAGAGGGTGTTA
GAAAGGATGGATGGAACTAAGATAACCTTTATTGTTGCTATGTAAACCCT
AGTTGCTTTTGCTGCTTGTCATGCATTAAGGAAGTGAAAATAAATCCGTC
CTCTATATAATTGGACTATCTTGCCCCTGTAGCTTCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_j06.g1 MSMg01no160_j06.g1 CHROMAT_FILE:
MSMg01no160_j06.g1 PHD_FILE: MSMg01no160_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:34 2005
         (285 letters)



>mm_chr3_42631369_42632056
          Length = 688

 Score =  476 bits (246), Expect = e-139
 Identities = 277/290 (95%), Gaps = 7/290 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaccaatgtcactcttctggaagagtattcaaggttaaagaaataataagtgtttaaa 60
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 385 tttaccaatgtcactcttctggaagaattttcaaggttaaagaaataataagtgtttaaa 326

                                                                       
Query: 61  caaataaaaatagctaccttggtttgattatttgaatacatacatatatttgattatata 120
           ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaat-aaaataactaccttggtttgattatttgaatacatacatatatttgattatata 267

                                                                       
Query: 121 catgtatatctaataaatgat-----atataatattcacatcacaaataagcatattcat 175
           |||||||||||||| ||||||     ||||||||||||||||||||||||||||||||||
Sbjct: 266 catgtatatctaat-aatgatatataatataatattcacatcacaaataagcatattcat 208

                                                                       
Query: 176 taagttttgtgatagctaaccttagttggcaaattcactatattttgaatcaactaagcc 235
           |||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct: 207 taagttttgtgatagcgaaacttagttgacaaattcactatattttgaatcaactaagcc 148

                                                             
Query: 236 acatataaacgtagagacatcatgataaataagtgcacagcatgcatcaa 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 acatataaacgtagagacatcatgataaataagtgcacagcatgcatcaa 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 688
Length adjustment: 9
Effective length of query: 276
Effective length of database: 679
Effective search space:   187404
Effective search space used:   187404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)