Query= MSMg01no160_k03.b1 MSMg01no160_k03.b1 CHROMAT_FILE:
MSMg01no160_k03.b1 PHD_FILE: MSMg01no160_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:38 2005
(312 letters)
>mm_chr3_120895389_120896100
Length = 712
Score = 555 bits (287), Expect = e-162
Identities = 302/307 (98%)
Strand = Plus / Minus
Query: 6 aattccatggcatggcatggtagcccaaccatgagggatgcacggaggttttgtacttcc 65
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aattccacggcatggcatggtagcccaaccatgagggatgcacggaggttttgtacttcc 605
Query: 66 tttcactgtacaagaagaaatgctggctgtcaccctctagactgatcccatgattcacca 125
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 604 tttcactgtagaagaagaaatgctggctgtcaccctctagactgatcccataattcacca 545
Query: 126 ctgggttgcagttgcaactctgtaaaatgttggttcagacaaacgtgctggcaatagaga 185
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 544 ctgggttgcagttgcaactctgtaaaatgatggttcagacaaacgtgctggcaatagaga 485
Query: 186 ggaagagaaatggagatgcccagaatgggttgtccagggagagctggcaggggctcttgg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggaagagaaatggagatgcccagaatgggttgtccagggagagctggcaggggctcttgg 425
Query: 246 cagactgcttgtcagggtcgggcgagggaaaagccagataaatgatggtttctaagattc 305
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 424 cagactgcttgtcagggtcgggtgagggaaaagccagataaatgatggtttctaagattc 365
Query: 306 ggcttga 312
|||||||
Sbjct: 364 ggcttga 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no160_k03.g1 MSMg01no160_k03.g1 CHROMAT_FILE:
MSMg01no160_k03.g1 PHD_FILE: MSMg01no160_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:39 2005
(187 letters)
>mm_chr3_120716588_120717174
Length = 587
Score = 298 bits (154), Expect = 1e-85
Identities = 167/176 (94%), Gaps = 8/176 (4%)
Strand = Plus / Plus
Query: 1 actggaggagatataaagaaaccaccagataaggctttattctcattttgtgccttcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggaggagatataaagaaaccaccagataaggctttattctcattttgtgccttcaac 260
Query: 61 ctgtaatctactctctaaccctcacctgagcaagaacacactctcccatgagaagaattc 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtaatccactctctaaccctcacctgagcaagaacacactctcccatgagaagaattc 320
Query: 121 cagcttaccttctctgacaatgcagtttatttatatatatatatgtgtgtgtgtgt 176
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cagcttaccttctctgacaatgcagtttat--------atatatgtgtgtgtgtgt 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space: 103641
Effective search space used: 103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
