TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACGTGGATGCTATGCCTCCTGAGCATCTGAGCTCTGGTCCTCAGG
CTTATGTGGCGTTGCTTTAACCACTGAGCTAACTCCTCAGTCTAGAAGAT
ACGATTAATTGTAACGAGGGATTTCACTTTATCAAGAACTCCTTTCAAAT
AATTTTCAGAAATAAAGCATATACTTTAAGTGATATATATATGCTTTGTG
TGACACACGCGTGCACAAACATACTCACAAATCTTCTCTCTTAAATCATT
CATATTAGGTTTTACCTGAGCTCCTCAGTGGATGCTAGCTGTAGTGACAA
TCATAACATGGTCACGCAGAACAAAAAAATCCTGAATCCGCTGCCTCTAT
ACAGTCATTTGTTCTACAAATACTAAACTCCTAAGATGGCTGGGCATTCA
GGACAGTTTGAGAACGTGAACATTAATACAGAAGAAAGTCACGTTCAAGT
ATAAGAACAGCAAACAGACATTAGGAAGCACACGCAAATGATGCCAGCTT
GTCCCAAGTGCTATGAAACAAAGCGTAAAGTACCAGTGAAGAAGATGTGA
CTCAATGTGGTGTGGTTACTGTTGATTTCCCTGCTGTCTTTGTTTGGGAC
TGGGTCTTGATGTGCAGACCAGGCTAGCCTCAGATTCAGCATCTCCTTGC
CACAGTTTCTGCAGTACTCGCATTACAGGTTTGCATGGGCTCATCCAGT

GATGAAGTGGGAGGCCTGGNGGCGCCTGTTTCCGACTGTAGGNGAACTAN
AGAAGGTTCCCCGGATTCCTTACGGGGTTTCTCACAAAAGCTCGTGAGTT
GGCTCCATTTTTATGCTANNAGAAGAGANGCGAANAANNCNNCANANCAN
NCCAGCTNCNAGGAGNCAAGGAGNACAAACANGGGCANCAGCCNCAGCCA
GCNCCAGGAGCNAGGGGCAGGAAGGGAAAGGNCCCAAAGGCGTTTTGAGA
CCTGCCCCAAACAGCTAGGCCTTGACCAAGCCCCAGTCCTGCGCTGAGCC
CCGAGTTTTTTTTTTTTTTGAGGCNGAGGAGGCCNNCAGCNACCACCCAT
TTTTTTTTCCCCCCCCCCCCCCCCCANAAAAANAAAGAAAAAAAGAATTN
GNTNTTANAAAAATAAAAATAAACAGGTTGGTGGGTGGGGTATTCNGTTG
GTAGGTTGTGATATATTAGAATTTAATGGAATTTTTTTTTAGAAATATGG
ATTTGTGAGATAAAGAGGATTTTGTGAGATAGGTATAAAAAATATGATAA
AGAGAGGGGAATAGGAAAGAATATATGGGGGGGAGGGTGAGGGGTATGTG
GTTGAAGGAGATGGTGAATTAATTTGAAGGTTTATATGTTTGTGTAGTTG
GTAGTAATAGGAGGGGATTTTTTTTTTTTTTTTTGTGGGAGGAGATGATG
TATAGAGAGGGATATTGTTGTGTAGTAAGGATAAGATTTTGTTTATGTTT
TATTGTTTTG

Query= MSMg01no160_n02.b1 MSMg01no160_n02.b1 CHROMAT_FILE:
MSMg01no160_n02.b1 PHD_FILE: MSMg01no160_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:53 2005
         (635 letters)



>mm_chr3_51210039_51211072
          Length = 1034

 Score = 1199 bits (620), Expect = 0.0
 Identities = 629/632 (99%), Gaps = 1/632 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccacgtggatgctatgcctcctgagcatctgagctctggtcctcaggcttatgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacgtggatgctatgcctcctgagcatctgagctctggtcctcaggcttatgt 263

                                                                       
Query: 64  ggcgttgctttaaccactgagctaactcctcagtctagaagatacgattaattgtaacga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggcgttgctttaaccactgagctaactcctcagtctagaagatacgattaattgtaacga 323

                                                                       
Query: 124 gggatttcactttatcaagaactcctttcaaataattttcagaaataaagcatatacttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggatttcactttatcaagaactcctttcaaataattttcagaaataaagcatatacttt 383

                                                                       
Query: 184 aagtgatatatatatgctttgtgtgacacacgcgtgcacaaacatactcacaaatcttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagtgatatatatatgctttgtgtgacacacgcgtgcacaaacatactcacaaatcttct 443

                                                                       
Query: 244 ctcttaaatcattcatattaggttttacctgagctcctcagtggatgctagctgtagtga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcttaaatcattcatattaggttttacctgagctcctcagtggatgctagctgtagtga 503

                                                                       
Query: 304 caatcataacatggtcacgcagaacaaaaaaatcctgaatccgctgcctctatacagtca 363
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 504 caatcataacatggccacgcagaa-aaaaaaatcctgaatccgctgcctctatacagtca 562

                                                                       
Query: 364 tttgttctacaaatactaaactcctaagatggctgggcattcaggacagtttgagaacgt 423
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttgtcctacaaatactaaactcctaagatggctgggcattcaggacagtttgagaacgt 622

                                                                       
Query: 424 gaacattaatacagaagaaagtcacgttcaagtataagaacagcaaacagacattaggaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaacattaatacagaagaaagtcacgttcaagtataagaacagcaaacagacattaggaa 682

                                                                       
Query: 484 gcacacgcaaatgatgccagcttgtcccaagtgctatgaaacaaagcgtaaagtaccagt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gcacacgcaaatgatgccagcttgtcccaagtgctatgaaacaaagcgtaaagtaccagt 742

                                                                       
Query: 544 gaagaagatgtgactcaatgtggtgtggttactgttgatttccctgctgtctttgtttgg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gaagaagatgtgactcaatgtggtgtggttactgttgatttccctgctgtctttgtttgg 802

                                           
Query: 604 gactgggtcttgatgtgcagaccaggctagcc 635
           ||||||||||||||||||||||||||||||||
Sbjct: 803 gactgggtcttgatgtgcagaccaggctagcc 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1034
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1024
Effective search space:   640000
Effective search space used:   640000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)