Query= MSMg01no161_b01.b1 MSMg01no161_b01.b1 CHROMAT_FILE:
MSMg01no161_b01.b1 PHD_FILE: MSMg01no161_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:15 2005
(421 letters)
>mm_chr3_13300758_13301578
Length = 821
Score = 714 bits (369), Expect = 0.0
Identities = 399/415 (96%), Gaps = 11/415 (2%)
Strand = Plus / Plus
Query: 18 gaattctcttcc-gacacgatgaaattaaatccagggtagagaaataacatctagatata 76
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctcttccagacacgatgaaattaaatccagggtagagaaataacatctagatata 266
Query: 77 tctgatttccatcttctctccagaggcagcaaaatacattattcatcagaaacatctcct 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tctgatttccatcttctctccagaggcagcaaaatacattattcatcagaaacatctcct 326
Query: 137 actatgataatataattgaggattggtcataacattcatcactattttccaagagtcaaa 196
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 327 actatgataatataattgaggattggtcataacattcatcattattttccaagagtcaaa 386
Query: 197 agtacttcttagtttttgataaaatgactacacaaaaccagcacacacaca--------- 247
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggtacttcttagtttttgataaaatgactacacaaaaccagcacacacacatacacacac 446
Query: 248 -cacacacacacacacacacacaatgtcatttgaagcttagtagccaatgtaaaggaatg 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acacacacacacacacacacacaatgtcatttgaagcttagtagccaatgtaaaggaatg 506
Query: 307 aaattagaatgacctaagtacacgaataacaatagttaacagctttaaaaatatttttta 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaattagaatgacctaagtacacgaataacaatagttaacagctttaaaaatatttttta 566
Query: 367 agcaaatgtttaacaaaaccaattaagtttaattggtaatgcaggaagatgacaa 421
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agcaaatgcaaaacaaaaccaattaagtttaattggtaatgcaggaagatgacaa 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no161_b01.g1 MSMg01no161_b01.g1 CHROMAT_FILE:
MSMg01no161_b01.g1 PHD_FILE: MSMg01no161_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:15 2005
(383 letters)
>mm_chr3_13468640_13469422
Length = 783
Score = 683 bits (353), Expect = 0.0
Identities = 374/381 (98%)
Strand = Plus / Minus
Query: 1 tcaattgctgttgttgatacctcttaacagaaacctgtttatcttaaattcagcatattc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 581 tcaattgctgttgttgatacctcttaacagaaacctgtttttcttaaattcagcatattc 522
Query: 61 gaagaatattgtggaactaactaagctgtactcatccacaattacagtcatagctcatat 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 521 taagaatattgtggaactaactaagctgtactcacccacaattacagtcatagctcatat 462
Query: 121 aactatattgatattttgattatgtaaaacagaacaagaagggcataaacatttaaaata 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 461 aactatattgatattttgattatgtaaaacaaaacaagaagggcataaacatttaaaata 402
Query: 181 taagattaataaaaaacacagtagcaaaaagcacaagtcaagtacatttttaaatggaga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 401 taagattaataaaaaacacagtagcaaaaagcacaagtcaagtacatttttaaacggaga 342
Query: 241 aaatagtggttaaaggtttcataagcaacaagcatctaagtaaacagacctcttcaaaag 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 341 aaatagtggttaaaggtttcataagcaaaaagcatctaagtaaacagacctcttcaaaag 282
Query: 301 atgtgcctgtgccatcctgctctgagcacatcttcctccatggttaaccacagaagattc 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 281 atgtgcctgtgccatcctgctctgagcacatcgtcctccatggttaaccacagaagattc 222
Query: 361 tggaggtttgaatagacaaac 381
|||||||||||||||||||||
Sbjct: 221 tggaggtttgaatagacaaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
