BAC Information

Click to search

BAC

Clone NameMSMg01-161C16
Chromosome3 (Build37)
Map Location 118,977,961 - 118,978,198
singlet/doubletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161C16.T7 (MSMg01no161_c16.b1)MSMg01-161C16.TJ (MSMg01no161_c16.g1)
ACCAG360642AG360643
length1,2171,201
length of high quality
(start - end)
419 (28 - 446)242 (70 - 311)
definitionCHROMAT_FILE: MSMg01no161_c16.b1 PHD_FILE: MSMg01no161_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:28 2005CHROMAT_FILE: MSMg01no161_c16.g1 PHD_FILE: MSMg01no161_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGCACTGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTT
TGTTTAGCTCTGAGCCCCTTTTTTAAAGGGGTTATTTGATTTTCTGGAGT
CCACCTTCTTGAGTTCTTTATATATATATTGGATATTAGTCCCCTATCTG
AATTAGGATAGGTAAAGATCTTTTCCCAATCTGTTGGTGGCCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTC
CCATTTGTCGATTCTTGATCTTATAGCATAAGCCATTGCTGTTCTATTCA
GGAATTTTTCCCCTGTATCCATATCTTCAAGGCTTTTCTCTACTTTCTCC
TCTGTAAGTTTCAGTGTCTCTGGTTTTAGGTGGAGTTCCTTAATCTTTTT
AGATATGACCTTAGTACAAGGTGATAGGAATGGATCAATTTGCATTTTTT
TTTCCCCCCCCCTGCCTGTTGTGCCAACACCATAAGAAGAAAGGGCTGTC
TTTTTTCCACTGGATGATTTTTGTTCCTTTGACAAAGATCAAGTGACCAT
AAGTGTGTGGGTTCATTTCTGGGTCAACAATTCTATTTCCATTTGTCTAC
TTGTCTGTCACTACACCAGTACCATGCAGTTTTTATCACAATTGCTCTGT
AGTACAGAAACTAGAGAGAGCACACACTAGCAGGTTGACAACACACCTAA
AAGCTCTAGAACAAAAGGAAGCAAATTCATCCAAGAGGAGTATACCGCCG
GAAATAATCAAACTCAGGGGCATAATCATCCAATTGGAAACAAGAACTAT
TTCCAGAATAAACCAAAGAAGGAGCTGGTTCTTTGAGAAAATCCATCAGA
TAGATAAACCCTTATCCAGACTCACTATAGGGCACAAGGGAAGCATCCTA
TTTAACAAATCATAAATGAAAATGGAGACTTAACCTATATCCTGGTAAAA
TCCAAAAATCCGTCTGAACCCTTTTCAAAAGGTTTTTATTTTCAAACTTG
GGAAACTCTGTATTAAATGGACATATTTTTCTTAAAAATCCCTCTCCCTC
ATTTAATTTTTATAATCCTCTTTATGATTTTAAATATTCCTTTTTTCCCC
CCTTATAAAAAAAATATTTTTTATTTTTTCCTTCTCTTAAAATCACTAAT
CCATGTGGTTATTTGTATATTCTCTCTTTTTTCCTTAATAACATTCTATA
TTTTCTAACAATTCCTC
NNAAAAGATGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATTAAAAATATAAAGTTCCCACCCATAGGG
ATTTTGTGGCAGAAAATTATAGATTTATATACAAATCTTACCATTAGCTG
AAATGAGACTATAATTCAGTCAGAAAAATATGTTTTTAAAAGTTTAGCTA
AAATTTGAAAAAAAAATCAGTAGTAAAATATCCTTTGGATGATCACAAAT
TGAACAAACTTGAACTTAAAATTGGGCAGGGTGTTTCAGTGGGGTGGGGG
TGGGGTGAATAACACATTATTCTATCTTTCTCGTACACCACTTTCACCCT
TTTATATTCCCTTATCTGCTTTTCTATCCTATACCCCACTCACTATTTTT
TTTTTACCAACCCCCACTCCCACAATTAATAAAAAAATTAAAATTCTTTT
TTTTTTTCCCCCCCCCCCCANNNNNNNNNNNNNNAAAAAAAAAAAGGGGG
GGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNN
NNNNNNNNNNNNNGGNNNGGNGGGGGGGGGGGGGGGGGGGGGGGGNGGGG
GGGNGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGNGGGGGGGGGGGG
GGGGGGGGNGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGNNGGGGGGGGGGGGGGGGGGGGNGGGNGGGGGGGGG
GGGGGGGGGGGGGGGNGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNG
GGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGNGNNGGGGGGGGGGGGNGGGGGNGGNGGNGGGGGGGG
GGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGG
GGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGG
GGGGGGGGNGGGGGGGGGGGNGGGGGNGGGNGGGGGNGGGGGGGGGGGGG
GGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGG
GGGGGNGNGNGGGNGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_c16.g1 MSMg01no161_c16.g1 CHROMAT_FILE:
MSMg01no161_c16.g1 PHD_FILE: MSMg01no161_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:28 2005
         (242 letters)



>mm_chr3_118977761_118978402
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattaaaaatataaagttcccacccatagggattttgtggcagaaaattatagatttata 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 cattaaaaatataaagttcccacccatagtgattttgtggcagaaaattatagatttata 260

                                                                       
Query: 61  tacaaatcttaccattagctgaaatgagactataattcagtcagaaaaatatgtttttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaaatcttaccattagctgaaatgagactataattcagtcagaaaaatatgtttttaa 320

                                                                       
Query: 121 aagtttagctaaaatttgaaaaaaaaatcagtagtaaaatatcctttggatgatcacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtttagctaaaatttgaaaaaaaaatcagtagtaaaatatcctttggatgatcacaaa 380

                                                                     
Query: 181 ttgaacaaacttgaacttaaaattgggcagggtgtttcagtggggtgggggtggggtg 238
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaacaaatttgaacttaaaattgggcagggtgtttcagtggggtgggggtggggtg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)