BAC Information

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BAC

Clone NameMSMg01-161H09
Chromosome3 (Build37)
Map Location 132,942,382 - 132,942,712
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik
Downstream genePpa2, E130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161H09.T7 (MSMg01no161_h09.b1)MSMg01-161H09.TJ (MSMg01no161_h09.g1)
ACCAG360860AG360861
length1,2881,310
length of high quality
(start - end)
370 (28 - 397)330 (71 - 400)
definitionCHROMAT_FILE: MSMg01no161_h09.b1 PHD_FILE: MSMg01no161_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:05 2005CHROMAT_FILE: MSMg01no161_h09.g1 PHD_FILE: MSMg01no161_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAGGCATGCGCGCTAACGACTCCTAAGGGAGAGGATCCGCGGAATTCT
ACAAGACATTTGAGGAATTACTATCTATACATCTCACACTCTTCAAAAGA
AACTGGAGTGTGTGAGAGCAATTTGCCACTCTCTTTGTGGCCAGCATTGC
CTTGACACCAAAGCAGACATTATCTGACCCGTCCAGCAGGTCCAGTTATT
CGAGGATCTCGAGGGGACCTCCTCCTAATAACCAAATGGGGGGTAGAGAG
AGACGAGGGTCTTGTACGAATAACGACACGGAGACCGTTCTGAAGTTGTA
TCAAGACCCCCATGTATTGAGAAAGGTCCAAGGTTTAAATGCACAAGCAA
AGGGGGAAGTACAGATACTTATCAGTGGGAGGGGTAGGGCAATACAAGTT
TTTTGGGAAGTAATTATCAGTGGGGGGGGGGGCAATAGAATTGCACATTC
TTTTTTTCCCCCCCCCCCAAGNAGGAATTTGTTGTTAAAAAAAAGGGGGG
GGGATATTTGTGATGATCTAGGGNTGGAANATCCCGTAGTTCTCGGAATC
CATGTGTCGGTGGCCCGCTTTTGACCCCTTTTTTCTTCTTGGGGGGAGAG
GCCCAATTCAGAGATCAGGACAATATCGTTGCCTTAATGGCTCCCAACAA
TTATCTAGTTGTAAAACTCCTCTGTAAGAGCAAGCCATACCGAGCATCAT
ATAAAAACAGTGATGCCCCTTCCCTTAGTGAGGTTTAACTCTTGGATCAT
ATGAATACCTTCTACTTTTATAAGTCTTTCATGATAATACTTTAACAGAC
TAATTCCTAATAACCTTCTTGACTTTTTCTGTTTGTTGTTATGGATTTCC
TCTCCTGTCACTTGTTATTTTATATTGTTTTGTCCTTTTTTTGGGTGTAA
TCATTGTACTTACTCGTTTTTTGTTCTCCTTTTTCGTTTAACTATCTGCC
TATTTTCTTACCCTTCTTTATTTACTCTCATTCTCTTTTACTCCTATCTA
ATACTTTAATCGTATATAATTTCTTTTTTGTATCTTATTTACCTTTTTAT
CTTTTTTTAACATCTCGTTTCTCCTATATATCTGTCTCTATTTCACATTA
ATTTTCTCGTCCTACTTGTCACTATTCTCTTTTATTCTTTCTATTCTCTC
TTCTTTTTCTCTTATATTTTTCTTTTCTTAAATATTATTCATTATAATAT
CTGTNTATATATCTACTACATCTCTCTATATCATTGTTCCTTNCTTCTTT
TACCTTCGCCTAACTATTNCATATTATTTTGCTTATTT
NNTTTTGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGGAGAGTGAACACTGAAGAAAAAAATTA
AATCAGCATTTTATGTTTTGGTGACTATGCAACATTTACCACGCCTTTAC
ATTTTATTTACTCAAAATGCAAGGATACTGAATTTTTTATGACAGGTTTT
ATTTGTTGAGCTACAAAACTATCTCAGGAAATTACATACTTTTCAAAGTC
AAGACTGAAGCTAGTGCTCTGCTTATCATTGAAGAGAAACAGCTTTAAAC
ATTAAATACACTTTTAAAAAAGCTATAGATTTTTAAATCTTATTTATGTG
TTTGTTTATTTATTTATTTATTTACTTATTTATTTGGTTTTTGGAGATTA
TGTTTCTCTGTGNAGCCCTGGCTGTTCTGTACCTCACCCTGTAGACCTTT
TTTTTTTCCCCCCCCCCCCATNAANNTGTNTCTGCTAAAAAAAAGGGGGG
ATTAAAGGTTTGTGTTATTATTGTTTGGTTTAAATATATTTTAAATTCAC
TGTTATTCCTGGTTTCTAAAATAAGAACCAAATTTACAGCTGTGTAGAAA
AAAAAAGGTAACACAGTCCCACTTTTGTCCAGTTAATGTAAATCCACATT
CTAATTTACCTTATTAGTGTTGTGATTGATTATCGGAATACTTTGAGTTC
CCATGTATAAATAACCATTCCTTAAATATTTTATTATAACTCAACTTATT
ATATGATCCCCTATAAACTTATCTCCTTTGAGCCTTTGTTTATGAATTTT
ATTACTTTTTCATGATCTTTTCAAATTTTGTCTTATTCTATATAATTCTT
TCATTCTTCTTTGTTGTCTTTTCATTTTATTCTTTTTGGTATTCCAGTTC
CTCTTTTAACATTTTCTATAAAATTTTTATTCCATTCTTTTATCTATAAT
TATACTCCATTAAATTCTTTGTCTTTATTATCATTTTTATTATCTCTTAT
CTTTCCTTCTTATTAAATTTTATTTTCTTTTTCTTATACTTCTAATTAAT
TATCTTTCTTATATTTTTCTATACTTTCATCTTTTCTCTTATCATCTCCT
AAATTTTTATATTTCCTCTCGATTCTCATATTACATTACTTATACTTCTA
CTCTTCCACCTCTCGTAATCTATCTTAANATTAATCTAATCTCCTTCTTC
TTCAACTATTTCTTATCTTTTCTTTCTTGCATTAACTATTTACAATTCTT
TCTTAATTTTAATATCATTCCTTATCTTACATTCATATTATATATCTTTT
CNTATCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_h09.g1 MSMg01no161_h09.g1 CHROMAT_FILE:
MSMg01no161_h09.g1 PHD_FILE: MSMg01no161_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:05 2005
         (330 letters)



>mm_chr3_132942182_132942911
          Length = 730

 Score =  503 bits (260), Expect = e-147
 Identities = 313/332 (94%), Gaps = 5/332 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggagagtgaacactgaagaaaaaaattaaatcagcattttatgttttggtgactatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggagagtgaacactgaagaaaaaaattaaatcagcattttatgttttggtgactatgc 260

                                                                       
Query: 61  aacatttaccacgcctttacattttatttactcaaaatgcaaggatactgaattttttat 120
           ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 261 aacatttaccatgcctttacattttatttactcaaaatacaaggatactgacttttttat 320

                                                                       
Query: 121 gacaggttttatttgttgagctacaaaactatctcaggaaattacatacttttcaaagtc 180
           ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gacagtttttatttgttgagctataaaactatctcagaaaattacatacttttcaaagtc 380

                                                                       
Query: 181 aagactgaagctagtgctctgcttatcattgaagagaaacagctttaaacattaaataca 240
           ||| ||||| | |||||||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct: 381 aaggctgaacccagtgctctgcttatcattgaagagaa-cagctttcaactttaaataca 439

                                                                       
Query: 241 cttttaaaaaa-gctatagatttttaaatcttatttatgtgtttgtttatttatt---ta 296
           ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||   ||
Sbjct: 440 cttttaaaaaaagctatagatttttaaatcttatttatttgtttatttatttattattta 499

                                           
Query: 297 tttatttacttatttatttggtttttggagat 328
           |||| |||||||||||||||||||||||||||
Sbjct: 500 tttacttacttatttatttggtttttggagat 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)