BAC Information

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BAC

Clone NameMSMg01-161L15
Chromosome3 (Build37)
Map Location 27,995,067 - 27,995,392
singlet/doubletsinglet
Overlap genePld1
Upstream geneEct2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik
Downstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161L15.T7 (MSMg01no161_l15.b1)MSMg01-161L15.TJ (MSMg01no161_l15.g1)
ACCAG361056AG361057
length1,2601,365
length of high quality
(start - end)
335 (28 - 362)122 (71 - 192)
definitionCHROMAT_FILE: MSMg01no161_l15.b1 PHD_FILE: MSMg01no161_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:40 2005CHROMAT_FILE: MSMg01no161_l15.g1 PHD_FILE: MSMg01no161_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTACACTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCGT
CATGCTGGGAGATCACTTCAATTAGTACTTCTCTGGAACCCATCATAACT
CAATTCATGCTTATTAGTACAGAACCCTGAACTGGGGCCCCTACAGTCTT
ATATAATATTTGGTATTCTGATTAGTGTTTTGACAACGTGACACAAACTA
AAGTTATCTGGAAAGAGGAGCCTAGATTGAGAATTGTCTCCATTAGATTG
GCCATCAGCTAGTGAATCAATCCATGGGACATTTTCTTGATTCATGATTG
ATATGGGAGGGCCCCACCCATGTTATGGCCCCGCCCATTAGGAGCATTGC
CGCATTGCACCCTGGGTGGGTGGTCCTGAGTGTTGTAAGAACTTTTTTTT
ATTCAGCCATGGGAAGTAAGCCAGTATGCGGGGTTTATCCATGTTTTTTT
TTTTCCCCCCCCCCCAAAAGAATATTNTCTCTTTTAAAAAAAAGAGGGGG
NTTTTGTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTGTTTT
GTGTTTTTTTTTTTTNTTTTTGTTTTTTTTTTTTTTTGTTTTGTTTTTTT
TTTTGTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTGTTTTTGTT
TTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTGTT
TTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTGTGTTTTTTTTGTTTTTTTTTTTTGTTTTTTTTTTTTTTT
TTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTG
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTGTTTTTTTTTTTTTTTTTTTGTTTTTTTGTTTGTTTTTTTTTTTTT
TTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTATTTTTTTNTTTTT
GTTTTTATGTTTTTTTGTTTTTTTGTTGGTATTATTTATATATATTTAAT
TTTTTTATATTAATTTTATATTTATTTTTTTATAAATTTATATTTTTTTG
TATTTTTATTTAATTTTAATAGTAATTTTTATATTTAGTTTATTTTTTTA
TATTTTTTTTATTGTATTATTAGTATTTTTAATTTATTGTTTTTATTATT
TATATTATTT
NNNTTACACGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCTGCTAACCTGGGTCTTTTTGATTGGG
GAATTGAGTCCATTGATGTTGAGAGATATTAATGACCAGTGATTGTTCTT
TCCTGTTATTTTGATATGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNN
NNNTNNNNNNNTTTTTTAAATTCTTATTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTCTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTT
TTTTTTTTTCTTTTTTTTTTTTTTNTTTNTTTTTTTTTTTTTNNNNNNNN
NNNNNNCCNNTNNNNTNCNNNNNNNNNNNNNNTTTTTTTTTTTTCCCCCC
CCCCCCCNNNNNNNNNNNNTCTCCCAAAAAAAAAAAGAGGGGGGNTTTNT
TTTTNNTTTTTCTCTTTTTTTTTTTCTTTCTTTTCTTTTCTTCTTCTCTC
TTTCTCTTTTCTTTTTTTCTTTTCTTTTTCTTTTCCTTTCTTTCTTTTTC
TTCTTCTTTTTCTTTTCTCTTTTTCTTTCTCCTTCTTCTCTTTCTCTTTT
CTTCTCCTTTCTCTTTTTTCCTTTTCTTTTTCTTTTTTTTTTTTCTTCTT
TTCTTTTCTCTTTCTTTTTTTCTTTTTTTTTTCCTTTTTTTTCTTTCCCC
TTTTTTTTTTTTTTTTCTTCTTTTCTTTTTCCTCTCTTCTCTTCTTCTTT
TTTTCTCTTTTTTCTCTCCTCTTTCTCTCCTTTTTTTCTTCTCTTCTTTT
CCTTTTCCTTTNCTTTTNTCTTTTTCTCTTTTTTTTCTTTTTTTCTTTTT
TTTCTTCTTTTCTCTTCCCTTCTTCCCTCTCTTTCTCTTTTTTTTTCCTN
TNTCTCTTTCTTTTCTTTCTTCCCTTTCTCTCTCTCTTCTTCTTCTCTTC
TTCTTCCTTTTTTTTTCTCTTCTCTCTTTTTTTTTCTTTTTTTCCCCCTT
TTTTTCCTTTNTTTTTTTTCTTTTCTTCTTTTTCTCTTTCTTTTCTTCTC
CTTCTCTTTTTTTTCTCTTTTTTCTTTTCTTTCTCTTNTTTTCNTTTCTT
CTTTCTTTNTTCCTCTCTTCTTCCTTTTCCTCTTCTTCCTTTTTTCCTTT
CCTTTTTTCTCTTTTCTTCTTCTCGCCGTTTTTTCTTTCGTTTGTTTCTT
CTTTTTCTTTTCTCTGTTTTCTTTCTTCTCTTTTCTCTTTTTTCTCTCTC
TCTCTCTCTTTCTCTCTCGTTTCTCCTCCTNTTTTTCTTTTTTATTGTTC
CTTTTTGCTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_l15.b1 MSMg01no161_l15.b1 CHROMAT_FILE:
MSMg01no161_l15.b1 PHD_FILE: MSMg01no161_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:40 2005
         (335 letters)



>mm_chr3_27995052_27995787
          Length = 736

 Score =  545 bits (282), Expect = e-159
 Identities = 313/326 (96%), Gaps = 6/326 (1%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattc-gtcatgctgggagatcacttcaattagtacttctctggaacccatcataactc 74
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 341 gaattcagtcatgctgggagatcacctcaattagtacttctctggaacccatcataactc 282

                                                                       
Query: 75  aattcatgcttattagtacagaaccctgaactggggcccctacagtcttatataatattt 134
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 281 aattcatgcttattagtacagaatcctgaactggggcccctacagtcttatataatactt 222

                                                                       
Query: 135 ggtattctgattagtgttttgacaacgtgacacaaactaaagttatctggaaagaggagc 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ggtattctgattagtgttttgacaacgtgacacaaactaaagttatctggaaagaggagc 162

                                                                       
Query: 195 ctagattgagaattgtctccattagattggccatcagctagtgaatcaatccatgggaca 254
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ctagattgagaactgtctccattagattggccatcagctagtgaatcaatccatgggaca 102

                                                                       
Query: 255 ttttcttgattcatgattgatatgggagggccccaccc-----atgttatggccccgccc 309
           |||||||||||||||||||||||||||||||||| |||     |||  ||||||||||||
Sbjct: 101 ttttcttgattcatgattgatatgggagggccccgccccgcccatgggatggccccgccc 42

                                     
Query: 310 attaggagcattgccgcattgcaccc 335
           ||||||||||||||||||||||||||
Sbjct: 41  attaggagcattgccgcattgcaccc 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 736
Length adjustment: 9
Effective length of query: 326
Effective length of database: 727
Effective search space:   237002
Effective search space used:   237002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)