Query= MSMg01no162_o22.b1 MSMg01no162_o22.b1 CHROMAT_FILE:
MSMg01no162_o22.b1 PHD_FILE: MSMg01no162_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:24 2005
(314 letters)
>mm_chr3_83410044_83410758
Length = 715
Score = 559 bits (289), Expect = e-164
Identities = 304/309 (98%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 7 attccattcct-aaaaaagttttgaataactcgcctagctacaaaatgcaccttgaactc 65
||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 207 attccattcctaaaaaaagttttgaataactcacctagctacaaaaggcaccttgaactc 266
Query: 66 tcagggttaagctataaattctcaggaaacaaatatcttcttccatattcttcaaaatca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcagggttaagctataaattctcaggaaacaaatatcttcttccatattcttcaaaatca 326
Query: 126 aaagtaagttcatggctacacagtttgatctaaagcttgctccctattagtttcaaagga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaagtaagttcatggctacacagtttgatctaaagcttgctccctattagtttcaaagga 386
Query: 186 tgcatgccttttctcctggagcccacaacattagacacacattcaagagagactctggtg 245
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cgcatgtcttttctcctggagcccacaacattagacacacattcaagagagactctggtg 446
Query: 246 aaagtctgaaattggaaactagccatcctagacagctaagctgggtttttctctgtgttc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaagtctgaaattggaaactagccatcctagacagctaagctgggtttttctctgtgttc 506
Query: 306 tgcaaaccc 314
|||||||||
Sbjct: 507 tgcaaaccc 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space: 215330
Effective search space used: 215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no162_o22.g1 MSMg01no162_o22.g1 CHROMAT_FILE:
MSMg01no162_o22.g1 PHD_FILE: MSMg01no162_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:25 2005
(284 letters)
>mm_chr3_83492815_83493498
Length = 684
Score = 516 bits (267), Expect = e-151
Identities = 279/283 (98%)
Strand = Plus / Minus
Query: 2 ttgaggaatttctctgtagagaagtatggagtcttgtgacaagaaaaaggcaccacagtg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttgaggaatttctctgtagagaagtatggagtcttgtgacaagaaaaaggcaccacagtg 425
Query: 62 aagagtaataggaagggggaggagctgaaacagaagctcttagggctaattcatggctgg 121
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 424 aagagtaataggaagggggcggagctgaaacagaagctcttagggctaattcacggctgg 365
Query: 122 cgtcatctccgttagccttgggagtgtttgacattgagttcagagaacatgaccagggct 181
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 364 cgtcatctccgttagccttgggagtgtttgacattgagtttagagaacatgaccagggct 305
Query: 182 gttttccacctgtcatggtgattaatgggaatattgttaggcaataatagtttaataaca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gttttccacctgtcatggtgattaatgggaatattgttaggcaataatagtttaataaca 245
Query: 242 tagctggggcctcaggggcacaacaaaatgtacaagaaattct 284
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 244 tagctggggcctcaggggcacaccaaaatgtacaagaaattct 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
