ACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACATTTTGTGGTGAAGTACATAAGCCATAATACAGAAAAAT
GCTAGTGTGTGTAAGAGCAAATATCTATGATGTCTTAAGTAAGTCATAAT
TTGCACTTGCAGAATGTGTGTAATTGCATAGTAATTAGCATCAGAAAGAA
CATTTCCTGACAATTAGAGTCTGATTAGAAAAATTTAGAAAGGTTCCTAA
AGTTAGGTTACCTTGGCCAAAAGGCTATTCTTAGTATCCCAGGAAATGTT
CCTGCATTGGTGACTGGAATTAGAAATCTTGGCAAAATAACTTAAACATA
GTCATGTGGTTGGTGAGGCCACACAGATGAGGAACGCTGAAATGAAGCAG
TGGGCAGAAGAGCCTTGGCTGTCCAAATTTTCCAGCATGGCTTCTTCTGC
TCAGCAAGACTGACTTCTTGCACAAAGGCAGTTTGTAAGGAAGGGTGTGG
CACATCAGACTCTCTGGCTTCCACCAACCAGACCTCACAGGTACTGATAA
TAGATGATGCCTCTAGATTGTACAGATACCTCCAAGAGCCACCACCCTGG
AGGACTGGGTCCAAAGCCCAATAGTCATTATGACTTTGTGACCATAGGCT
TCCTTCTGTCCACCTCCCAAGGTGTCCCTGAGATATATACCTAGAATTAG
AAATCAGATATAACCC

NAACCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCTGGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTG
ATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAA
TTTGCTAAACAC

Query= MSMg01no163_e01.b1 MSMg01no163_e01.b1 CHROMAT_FILE:
MSMg01no163_e01.b1 PHD_FILE: MSMg01no163_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:49 2005
         (617 letters)



>mm_chr3_39017456_39018472
          Length = 1017

 Score = 1147 bits (593), Expect = 0.0
 Identities = 608/613 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacattttgtggtgaagtacataagccataatacagaaaaatgctagtgtgtgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattccacattttgtggtgaagtacataagccataatacagaaaaatgctagtgtgcgt 264

                                                                       
Query: 65  aagagcaaatatctatgatgtcttaagtaagtcataatttgcacttgcagaatgtgtgta 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagagcaaatatttatgatgtcttaagtaagtcataatttgcacttgcagaatgtgtgta 324

                                                                       
Query: 125 attgcatagtaattagcatcagaaagaacatttcctgacaattagagtctgattagaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attgcatagtaattagcatcagaaagaacatttcctgacaattagagtctgattagaaaa 384

                                                                       
Query: 185 atttagaaaggttcctaaagttaggttaccttggccaaaaggctattcttagtatcccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttagaaaggttcctaaagttaggttaccttggccaaaaggctattcttagtatcccag 444

                                                                       
Query: 245 gaaatgttcctgcattggtgactggaattagaaatcttggcaaaataacttaaacatagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaatgttcctgcattggtgactggaattagaaatcttggcaaaataacttaaacatagt 504

                                                                       
Query: 305 catgtggttggtgaggccacacagatgaggaacgctgaaatgaagcagtgggcagaagag 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 catgtggttggtgaggccacacagatgaggaacactgaaatgaagcagtgggcagaagag 564

                                                                       
Query: 365 ccttggctgtccaaattttccagcatggcttcttctgctcagcaagactgacttcttgca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccttggctgtccaaattttccagcatggcttcttctgctcagcaagactgacttcttgca 624

                                                                       
Query: 425 caaaggcagtttgtaaggaagggtgtggcacatcagactctctggcttccaccaaccaga 484
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaaggcagtttgtaagaaagggtgtggcacatcagactctctggcttccaccaaccaga 684

                                                                       
Query: 485 cctcacaggtactgataatagatgatgcctctagattgtacagatacctccaagagccac 544
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctcacagatactgataatagatgatgcctctagattgtacagatacctccaagagccac 744

                                                                       
Query: 545 caccctggaggactgggtccaaagcccaatagtcattatgactttgtgaccataggcttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caccctggaggactgggtccaaagcccaatagtcattatgactttgtgaccataggcttc 804

                        
Query: 605 cttctgtccacct 617
           |||||||||||||
Sbjct: 805 cttctgtccacct 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)