BAC Information

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BAC

Clone NameMSMg01-163E10
Chromosome3 (Build37)
Map Location 33,011,540 - 33,191,447
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163E10.T7 (MSMg01no163_e10.b1)MSMg01-163E10.TJ (MSMg01no163_e10.g1)
ACCAG362141AG362142
length732837
length of high quality
(start - end)		273 (45 - 317)144 (74 - 217)
definitionCHROMAT_FILE: MSMg01no163_e10.b1 PHD_FILE: MSMg01no163_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:50 2005CHROMAT_FILE: MSMg01no163_e10.g1 PHD_FILE: MSMg01no163_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,011,540 - 33,011,808)(33,191,306 - 33,191,447)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTACTCTCAGGTTGTTCTGCGCTCCAACCTTGAGTAATTAACAAA
ACTTCTGTGCTTTAATTGCTGATCCTTCCCTTGATGGCAGTCTATGACAT
TTTTAATTAATTGCTTCAGTAGCCTCATTTCCATCCACACAGAGGTCTTA
CATTTCTTTCAGTATTTCCTTTTTGACTTATTAACTATTCTGTTACAATT
GTACATAGACCTAATCACTTTGAGTAGTGAAGAAATACTGAATGAATTCA
AAGGCATGCCTTAAATCTGCTCAAAGTAAATAATCTCTTTCTTTAAAAAG
TGTCTTTGTTTATTGCCCCTGACGGNACCCAGAATATAAAAAGAAAAGAT
AGCCGGGAGTGCCGCCACACACCTAAAATCCCAGCACATGGGAGGCAGAG
GCAGGTGAATTTCTGAGTCTGAGGCCAGCCTGGTCTACAGAGTGAGTTCC
AGGACAACCAGGGCTATACAGAGAAACCCTGTCTTGACCAAACTATTTAA
GAACAGAAAAGATAGAGTTGTGAGACGGCTCACTGGTTAAGAACATCTGT
GGCCCTGACAGAAAGCCAGAGATCAGTTTTACGCCAACCTGCCAAGTGAC
TGACATTTTCAGTGGACCCGAATCCCACCTTTTGGTTTCTGTGGTACTTC
CACTTTGAAGGAAAATTTTTTATATATATGAT

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAAGCTTGAAATGTTCTCCTTTGGGT
AGGTAGGTGTGGCACTAAATTCCCTTTTTTGGGTGTATATAGTGAGAAAA
GGTTGGGGTTTATCTATTAAGGGTTTATGTTAGAGTATAGAATAATCATA
GTTACTCATGTGCACTGACATGTGTGTGACAATATTCCCCCATCTACTCT
GTTTATAGTAAGGATGCACTGCCTTAGCCCGCACCTAACGTTTCTTTGAA
CTCAATTATTTCTTTTTTTTTTTTTTNTCCCCCATCTCGCTAATATTTGG
AATTTTTAAATGCCTTCCAAANACAAAACCCCTTAATGTATTTTTTTTTT
TTATGTTTTGTGTCCCCCCCCCCCCAAAAAAAAATAATATCCCCCCGCGG
GCGGGTGCGCTCTATTACCTTCCTTTCTCTCTTTTCACTTTTTTCCTCCC
ATCGACTTATCCTTCCATCTTTATCCTTTTTTTTCTCCATCCTCCTTTAC
TTTTTCTTCCTCTTCTCTTCTCTTTCCTCTTTTTTCTTTCCCTTTCTTAA
ATACTTCTTATATATCCCCTCTAAACCACCCTTCACCTCCCCCCTTTTCC
CCCCCCCCCCCTTTTTCCCCCCCCCTCCCCTCTACGTTCTTTTCGTTTTT
ATTTATAGCATTAACCCTTTTTGTTTTACTTCCTACGCCCTCCCTTCACT
CCTTTTTTCCCCCATCCCTTCCATATATTTTGCGTTACCTTCTCCCTATT
TTTTTACCACCCCCATTCCCCCCCCTACTTTTCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_e10.b1 MSMg01no163_e10.b1 CHROMAT_FILE:
MSMg01no163_e10.b1 PHD_FILE: MSMg01no163_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:50 2005
         (273 letters)



>mm_chr3_33011336_33012008
          Length = 673

 Score =  520 bits (269), Expect = e-152
 Identities = 269/269 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattactctcaggttgttctgcgctccaaccttgagtaattaacaaaacttctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattactctcaggttgttctgcgctccaaccttgagtaattaacaaaacttctgt 264

                                                                       
Query: 65  gctttaattgctgatccttcccttgatggcagtctatgacatttttaattaattgcttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctttaattgctgatccttcccttgatggcagtctatgacatttttaattaattgcttca 324

                                                                       
Query: 125 gtagcctcatttccatccacacagaggtcttacatttctttcagtatttcctttttgact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtagcctcatttccatccacacagaggtcttacatttctttcagtatttcctttttgact 384

                                                                       
Query: 185 tattaactattctgttacaattgtacatagacctaatcactttgagtagtgaagaaatac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattaactattctgttacaattgtacatagacctaatcactttgagtagtgaagaaatac 444

                                        
Query: 245 tgaatgaattcaaaggcatgccttaaatc 273
           |||||||||||||||||||||||||||||
Sbjct: 445 tgaatgaattcaaaggcatgccttaaatc 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no163_e10.g1 MSMg01no163_e10.g1 CHROMAT_FILE:
MSMg01no163_e10.g1 PHD_FILE: MSMg01no163_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:51 2005
         (144 letters)



>mm_chr3_33191106_33191649
          Length = 544

 Score =  267 bits (138), Expect = 2e-76
 Identities = 141/142 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagcttgaaatgttctcctttgggtaggtaggtgtggcactaaattcccttttttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aaaagcttgaaatgttctcctttgggtaggtaggtgtggcactaaattcccttttttggg 283

                                                                       
Query: 61  tgtatatagtgagaaaaggttggggtttatctattaagggtttatgttagagtatagaat 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgtatatagtgggaaaaggttggggtttatctattaagggtttatgttagagtatagaat 223

                                 
Query: 121 aatcatagttactcatgtgcac 142
           ||||||||||||||||||||||
Sbjct: 222 aatcatagttactcatgtgcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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