Query= MSMg01no163_h05.b1 MSMg01no163_h05.b1 CHROMAT_FILE:
MSMg01no163_h05.b1 PHD_FILE: MSMg01no163_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:03 2005
(690 letters)
>mm_chr3_43649391_43650480
Length = 1090
Score = 1303 bits (674), Expect = 0.0
Identities = 683/686 (99%)
Strand = Plus / Minus
Query: 5 gaattctgactggcagattcaactaattttttacgactgaaactcctcactaaattttaa 64
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gaattctggctggcagattcaactaattttttacgactgaaactcctcactaaattttaa 831
Query: 65 gatgtgattcattttagaataattccacagtaatggcagacttaatttccaggtcacctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gatgtgattcattttagaataattccacagtaatggcagacttaatttccaggtcacctt 771
Query: 125 ggctagaataaatgatgaaaatgagaacattggagatttgcaacacacgggtggatggga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ggctagaataaatgatgaaaatgagaacattggagatttgcaacacacgggtggatggga 711
Query: 185 tgtaaagttctgttagatctgcttaaaatgctctacaacaccgttttttagcattgtgac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tgtaaagttctgttagatctgcttaaaatgctctacaacaccgttttttagcattgtgac 651
Query: 245 attggatgatcaacaaatctcaatgcaggtaaaaacagagaatagggcatagaaaattcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 attggatgatcaacaaatctcaatgcaggtaaaaacagagaatagggcatagaaaattcc 591
Query: 305 atcaaaggtgtatttattgagaatagtgcatggagcagtagtctttaagttgaaagttca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 atcaaaggtgtatttattgagaatagtgcatggagcagtagtctttaagttgaaagttca 531
Query: 365 ttgaaggacatttgtgtaaccacagctaaaatagtagtctgtagattagaaaataattgt 424
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 530 ttgaaggacatttgtgtaaccacagctaaaatagtagtctgtagatgagaaaataattgt 471
Query: 425 gtttcagagagataataaacagaattttaataggaaaatgaccctctgtatatgtgttaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtttcagagagataataaacagaattttaataggaaaatgaccctctgtatatgtgttaa 411
Query: 485 aatatacatgaggagacaataccgtctgatttagtttaaggtttttagaatagagaaaac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aatatacatgaggagacaataccgtctgatttagtttaaggtttttagaatagagaaaac 351
Query: 545 tttaaatctatgaatgttgaagaaaaccctttaagaaaacatcgcaaattttgcaaacaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tttaaatctatgaatgttgaagaaaaccctttaagaaaacatcgcaaattttgcaaacaa 291
Query: 605 tcccaaaacattttctgaagttgtgaaaaatatagaagagctaaaaaaattgcaatttat 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tcccaaaacattttctgaagttgtgaaaaatatagaagagctaaaaaaattgcaatttat 231
Query: 665 cataaataccccaagagcccacactt 690
||||||||||||||||| ||||||||
Sbjct: 230 cataaataccccaagagtccacactt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_h05.g1 MSMg01no163_h05.g1 CHROMAT_FILE:
MSMg01no163_h05.g1 PHD_FILE: MSMg01no163_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:03 2005
(614 letters)
>mm_chr3_43606746_43607760
Length = 1015
Score = 1081 bits (559), Expect = 0.0
Identities = 609/645 (94%), Gaps = 31/645 (4%)
Strand = Plus / Plus
Query: 1 tcactgacatcaaacttaaaatatttcccatgacctgtttactatcatcttctgatgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tcactgacatcaaacttaaaatatttcccatgacctgtttactatcatcttctgatgaaa 230
Query: 61 cataaagacattcaaaagatattcatggaacaccagactaagaaatgatcgtaaattgaa 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 231 cataaagacattcaaaagatattcatggaacactagactaagaaatgatcgtaaattgaa 290
Query: 121 aggatggacatggatcttagagatttgcgtttgtttctaagcaaactctaatttccaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aggatggacatggatcttagagatttgcgtttgtttctaagcaaactctaatttccaaag 350
Query: 181 atgccagaaccgttgttctacagcactgcagaataagtctacaacatcttaatgtatcag 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atgccagaacccttgttctacagcactgcagaataagtctacaacatcttaatgtatcag 410
Query: 241 cttctgggaacctagagacaactaatattcatttctgtgatcttatttggaacaagccac 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 411 cttctgggaacctagagacaactaatattcatttctgtgatcttatttggaacaagtcac 470
Query: 301 tacgccatttgatgtgtagctatttataaaaatatcctaaaacaagtaaaaatgactata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tacgccatttgatgtgtagctatttataaaaatatcctaaaacaagtaaaaatgactata 530
Query: 361 atcatagaattgagtataccattcaaaaaatctctgcaatctgctctaacacacacacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 atcatagaattgagtataccattcaaaaaatctctgcaatctgctctaacacacacacac 590
Query: 421 acacacacacata------------------------------tcgggaaatcacaaacc 450
||||||||||| | || ||||||||||||||
Sbjct: 591 acacacacacacacacacacacacacacacacacacacacacatcaggaaatcacaaacc 650
Query: 451 tttgttgaagacatgaaacaaacagtactcacatattctattcatatatttctagagact 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tttgttgaagacatgaaacaaacagtactcacatattctattcatatatttctagagact 710
Query: 511 caaagagacataattccaactgtctatagtaaaaaaaaa-tacctgttttcccttttttc 569
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 711 caaagagacataattccaactgtctatagtaaaaaaaaaatacctgttttcccttttttc 770
Query: 570 tttttgcctcacacaatatttgatatgcataacagaacttctagc 614
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tttttgcctcacacaatatttgatatgcataacagaacttctagc 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1015
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1005
Effective search space: 607020
Effective search space used: 607020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
