NCCATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTACATTCCGATGTCCAACCAAAGTCTCTGTAAGACCCT
GAGATGTTCCTTTATTCAGTTTCCTGGTTTGATGCTCAAAGGCAGTAAAC
TCAATAAAGATGACAAACAGATGGCTAGTACCATCTAGTGGCAGTAAAGA
AAGAGACAAAATAATAATAATAATAGAAACAAAAACCATGCTTAATGGCC
TTTCCTAAAAGAGAAAGGAAGGTTGAGACTTTATGCTTCCTTCTAGGCTG
AAAACATGGAGCAGGTCAGCACTGGTTGCCTGCCACAGAGAGAAGAGTCA
AGACGTTACATTATTTCAATGCCCCCACCCCGCGATGGTTGCTTTTAGGG
ACTTCCTTATATAGGGCACACTTCTGCTTGTTTTGTGAATGGAATCTCAG
AGCAGCAAAGGCTTGAATCACATTTTTCAGATGTTTTTAGCAGCTGCAAC
TGCATGCTGCGTAGCTAAGACTCATAATTACCATGTGTCAGGTAAGACCT
TTATTTAATTTTCAAAATAACCCTTTGGGCTGGTATTCTTGGTCTCATTT
ATGAAGAAATCCAGGCCCATAGAACTTGGAGACTTGACCAAAGGTACATA
GTTTGTAGAGGTTGTAATGGGACTAGGCATCACAAGGGAGTGGATGTGTC
AACCCTATCTCCAATATGCTTGTC

NCCATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTAGATCTGTACCCCA
GTTTTTAATTGGATTATTTGGTTTGTTGATGTCTAGTTTCTTGAGATCTT
CATATATTTTGGATATTATCCCTCTAGAGGATGTGAGGTTGGTAATATAT
ATTCCTAGTCTGTACAATGCCATTTTATCCTATTGACAATATACTTTGCC
TTGCAGTTTCATGAGGTCTTATTTATTAATTGTTATTAATCTTAGTGCCT
GTGCTATGTCAGTGTTCTATTCAGGAAATTGTCTCCTGAGCTATTGCATT
CAAGGCTCTTATTTATTTTTCCCTGCCCCCCGTTCAGTGTGCCTGATTTT
ATGTTGAGGTCTTTGATGCATTTGGGCTTGAATTTTGTGCAGGGTAATAA
ATATGGATCTATTTGCATTGTTTTAGATACAGACATTCAGTTTTATAAGC
AGCATTTGTTGAAGATGGTTTCTTATTTCCACTGTATCTTTCTAGTTCTT
TGTAAAAAATAAAAAATCAGGTGTGTTTATAGATTGTGGACTTATGTATG
AGCCTTTGATTTTATTTATGCCAATACCATGTAGTTATTATTATTATAGC
TGTGTAATATATTTTGAAACCTGGGACGGTGATATCTCTGTAGATTGCTT
TTGTAAGGATGCCCAN

Query= MSMg01no163_j11.b1 MSMg01no163_j11.b1 CHROMAT_FILE:
MSMg01no163_j11.b1 PHD_FILE: MSMg01no163_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:13 2005
         (672 letters)



>mm_chr3_56836560_56837630
          Length = 1071

 Score = 1087 bits (562), Expect = 0.0
 Identities = 641/676 (94%), Gaps = 15/676 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctacattccgatgtccaaccaaagtctctgtaagaccctgagatgttcctttat 63
           |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 697 ggaattctacattctgatatccaaccaaagtctctgtaagaccctgagatgttcctgtat 638

                                                                       
Query: 64  tcagtttcctggtttgatgctcaaaggcagtaaactcaataaagatgacaaacagatggc 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tcagtttcctggtttgatgttcaaaggcagtaaactcaataaagatgacaaacagatggc 578

                                                                       
Query: 124 tagtaccatctagtggcagtaaagaaagagacaaaataataataataatagaaacaaaaa 183
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 577 tagtaccatctagtggcagtaaagaaagaggcaaaataataataataatagaaacaaaaa 518

                                                                       
Query: 184 ccatgcttaatggcctttcctaaaagagaaaggaaggttgagactttatgcttccttcta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ccatgcttaatggcctttcctaaaagagaaaggaaggttgagactttatgcttccttcta 458

                                                                       
Query: 244 ggctgaaaacatggagcaggtcagcactggttgcctgccacagagagaagagtcaagacg 303
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 457 ggctgaaaacatggagcaggtcagcactgggtgcctgccacagagagaagagtcaagagg 398

                                                                       
Query: 304 ttacattatttcaatgcccccaccccgcga-------tggttgcttttagggacttcctt 356
           ||||||||| |||||||||        |||       |||||||||||||||||||||||
Sbjct: 397 ttacattatctcaatgccc--------cgagttgggttggttgcttttagggacttcctt 346

                                                                       
Query: 357 atatagggcacacttctgcttgttttgtgaatggaatctcagagcagcaaaggcttgaat 416
           ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 345 atatagggcactcttctgcttgttttgtgaatggaatctcatagaagcaaaggcttgaat 286

                                                                       
Query: 417 cacatttttcagatgtttttagcagctgcaactgcatgctgcgtagctaagactcataat 476
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cacatttttcaaatgtttttagcagctgcaactgcatgctgcgtagctaagactcataat 226

                                                                       
Query: 477 taccatgtgtcaggtaagacctttatttaattttcaaaataaccctttgggctggtattc 536
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 225 taccatgtgtcaggtaagacctttatttaattttcaaaattaccctttgggctgatattc 166

                                                                       
Query: 537 ttggtctcatttatgaagaaatccaggcccatagaacttggagacttgaccaaaggtaca 596
           ||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 165 ttggtttcatttttgaagaaatccaggcccatagaacatggagacttgaccaaaggtaca 106

                                                                       
Query: 597 tagtttgtagaggttgtaatgggactaggcatcacaagggagtggatgtgtcaaccctat 656
           ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct: 105 tagtttgtagaggttgtaatgtgactgggcatcacaaggaagtggatgtgtcaaccctat 46

                           
Query: 657 ctccaatatgcttgtc 672
           ||||||||||||||||
Sbjct: 45  ctccaatatgcttgtc 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space:   702382
Effective search space used:   702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)