BAC Information

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BAC

Clone NameMSMg01-163M02
Chromosome3 (Build37)
Map Location 76,150,963 - 76,151,246
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneWdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163M02.T7 (MSMg01no163_m02.b1)MSMg01-163M02.TJ (MSMg01no163_m02.g1)
ACCAG362459AG362460
length712707
length of high quality
(start - end)
315 (51 - 365)288 (80 - 367)
definitionCHROMAT_FILE: MSMg01no163_m02.b1 PHD_FILE: MSMg01no163_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:25 2005CHROMAT_FILE: MSMg01no163_m02.g1 PHD_FILE: MSMg01no163_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATCAAACGTTCCTTCCCATTCCAATCCTCCCACATTGCTA
CCACTGCTATTCTCTCCCAATTTTGTAGAAGTAGGCTCCATTTATTTATT
TATTTATTTATTTATTTATTTATTTATTTATTCATTCATGTATAAATTCA
CCAAAACAACTTAGTGTACCCAGTCGGTGTTTTGTTGTAGAGCTATATGC
CAGAGTATGGAGAGCCTCTCAGGAGGCAAATCACTGAAGCAAAGTGACTT
CATTTTCCTTAGTAGTGATCATCTGCCAATAGCTCTTTTAGCTAAAGGTA
ATACTCCATTAATTTTTGTCTTCGCCCACCCCCACCTGGCTGGNTTGATA
TTCCACCCCCAACACCAAAAGGACAAGATAAATATATCTCACTTTCACCC
AAGTATGAAATATACACACACACATACACACACACACACACACACACACA
CACACATACCCTGACACACACAATATATGTATACACACACACACACATAC
ACCCACACACACATCCATACTATATACACGTGTATATGTGTATATATATA
TATATCTATATATATATATATATATGTATATATGCAGAGAGTTGAACAGA
TAAATATTAGAGCCAAACGTATTCATTCTTTTAACAGATTTACGCGCTAT
GTTACGACCCAC
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTTGAATCATGTTTTGTA
ATATAGAATTTTGAGGGGCTCTTGTGTCAGGATCCTTGTGTTGCTAGCCT
AGGAACTCTTGGTAGAAATATATGTCACTTGTTTTATTACTAAACTTAGA
GAGCATGTTTGAACTTAAAACACAGAGTCCATGCCTTGATCTTTTGATTA
AGGAATATAACACTTTTGGGTGGTGACAGATCTTTCAAATAGATTGAGCT
TTCTGATGAATGAGTAACTAATGTTTGCATTCTCAGACTGTCGAGTGTAA
TTTTATGAAAGTGTTTTCTTTCGCCCCCCCCTACTGAGTCTACTTGTAGC
ATAAAATATACTGTTTCCTAATAGGCACAAATATGACTGAAGTACATAGA
ATAAATTAATCTTGATGTTTCTTATTGGTTATAAGTATGAATGAATATAG
GAGTTCTAGACTTCTGAGGTCTAAAATTTTCATTAGCTTCCTGAGATATA
ATTGAGTTTACATCAACATTTACAGACTGATGTTAAGTAAACTGCAATAG
TTTGATTTTTAATGCCCACCATAAATCCAGAGTCATGTTATGAAGGGTAG
GGGTACGTGTTTTGAGATATGAAACCTGGTGTTTTGCCTTAAGCACTTTA
TTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_m02.g1 MSMg01no163_m02.g1 CHROMAT_FILE:
MSMg01no163_m02.g1 PHD_FILE: MSMg01no163_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:25 2005
         (288 letters)



>mm_chr3_76150763_76151450
          Length = 688

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgttgaatcatgttttgtaatatagaattttgaggggctcttgtgtcaggatccttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgttgaatcatgttttgtaatatagaattttgaggggctcttgtgtcaggatccttgt 260

                                                                       
Query: 61  gttgctagcctaggaactcttggtagaaatatatgtcacttgttttattactaaacttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgctagcctaggaactcttggtagaaatatatgtcacttgttttattactaaacttag 320

                                                                       
Query: 121 agagcatgtttgaacttaaaacacagagtccatgccttgatcttttgattaaggaatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagcatgtttgaacttaaaacacagagtccatgccttgatcttttgattaaggaatata 380

                                                                       
Query: 181 acacttttgggtggtgacagatctttcaaatagattgagctttctgatgaatgagtaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacttttgggtggtgacagatctttcaaatagattgagctttctgatgaatgagtaact 440

                                                       
Query: 241 aatgtttgcattctcagactgtcgagtgtaattttatgaaagtg 284
           ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgtttgctttctcagactgtcgagtgtaattttatgaaagtg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)