BAC Information

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BAC

Clone NameMSMg01-163N18
Chromosome3 (Build37)
Map Location 136,306,646 - 136,306,931
singlet/doubletsinglet
Overlap genenone
Upstream geneNfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
Downstream genePpp3ca, LOC668870, LOC100039447, Emcn, EG229862, Ddit4l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163N18.T7 (MSMg01no163_n18.b1)MSMg01-163N18.TJ (MSMg01no163_n18.g1)
ACCAG362531AG362532
length748739
length of high quality
(start - end)
359 (382 - 740)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no163_n18.b1 PHD_FILE: MSMg01no163_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:33 2005CHROMAT_FILE: MSMg01no163_n18.g1 PHD_FILE: MSMg01no163_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAACAACTCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGT
TACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTC
CTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGA
AAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATAC
TAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCG
ACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAG
CATCAGCAACATATTTCAAGAGACGGAACAGAGAATCTCAGGTGCAGAAG
ACTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAA
AAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACC
AAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAG
GACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTA
AAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAG
ACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAA
ATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTCATGCTAATGAGATGTCCT
GGCCCTGGTCATTGGTGTACACTCATTCCAATATTTCCTATTGACACCAC
AAAGGTTTAAATTGCCTTTGTTTTTCACAATAAACTGAACCAGTTCTCTG
AAGCTGTTCCCAGGAATGCATTCTTTGCCCACACACTCACCATGGAACAA
GGCCCTGCCTGCATCCACCTTCCTTGCTAAGTCCCGTTCTTTCCAGCACA
GCCCAGTATACTGGTAGATAGTGCCTATCCAGTTCACTAAGCTTGTTGTT
TTATGTTTCTTCTACAAAGCACCCACCTTTGTCAGATGTTTAGTATTCAG
CTATTTTGATGTTTATACTATAGAAGTAATACTATAGAGACATACAAAAG
TAGATTGGCTCTGCCAGCACCTGACCAATACAGATGTAGATACAGCCAAC
CATCAGACTGAGCCTGGGGAACCCAATGGAAGAAACAGGGGAATGACTGA
AGAATCTGAAGGGGGTTGCAACCCCATAGGAAGAACAAGAATATCAACTA
ACTGAACCACTCAAAACTCCCAGGAACTAAGCCACCAACCAGAGTTCACA
TGGAGGGACTCATTGGTCCATATGTAGCAGAGGATTGCCTTATCTTGCAT
CAATGGGGAGGGAGGCCTTTGGACCTGTAGTCTTTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_n18.g1 MSMg01no163_n18.g1 CHROMAT_FILE:
MSMg01no163_n18.g1 PHD_FILE: MSMg01no163_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:33 2005
         (286 letters)



>mm_chr3_136306446_136307131
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctcatgctaatgagatgtcctggccctggtcattggtgtacactcattccaatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctcctcatgctaatgagatgtcctggccctggtcattggtgtacactcattccaatattt 427

                                                                       
Query: 61  cctattgacaccacaaaggtttaaattgcctttgtttttcacaataaactgaaccagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cctattgacaccacaaaggtttaaattgcctttgtttttcacaataaactgaaccagttc 367

                                                                       
Query: 121 tctgaagctgttcccaggaatgcattctttgcccacacactcaccatggaacaaggccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tctgaagctgttcccaggaatgcattctttgcccacacactcaccatggaacaaggccct 307

                                                                       
Query: 181 gcctgcatccaccttccttgctaagtcccgttctttccagcacagcccagtatactggta 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcctgcattcaccttccttgctaagtcccgttctttccagcacagcccagtatactggta 247

                                                         
Query: 241 gatagtgcctatccagttcactaagcttgttgttttatgtttcttc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gatagtgcctatccagttcactaagcttgttgttttatgtttcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)