BAC Information

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BAC

Clone NameMSMg01-164D22
Chromosome3 (Build37)
Map Location 32,859,214 - 32,859,533
singlet/doubletsinglet
Overlap genePex2
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164D22.T7 (MSMg01no164_d22.b1)MSMg01-164D22.TJ (MSMg01no164_d22.g1)
ACCAG362782AG362783
length740742
length of high quality
(start - end)
323 (43 - 365)349 (70 - 418)
definitionCHROMAT_FILE: MSMg01no164_d22.b1 PHD_FILE: MSMg01no164_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:02 2005CHROMAT_FILE: MSMg01no164_d22.g1 PHD_FILE: MSMg01no164_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCCAACTGCTTCTTATGGTTTAAAGAAAACAAGATGCCTTCCAAGCA
TCTGGAAAGTGACACAGATGGTCACAGCTTTGGGCAGCTAACACAGTGCT
AGGGAATATTAACCTTCCTGCTGTTAGCAGCCATGGGGCCCTAGGTGATC
CCCAGAAGTTCAGCATCATCCTGTTTCCCTGCCAGTGAGAATCAGGGCAC
TAACCACTGTGGCCCACTTCCTTTATTCATAATTCTGAGGTGAAATAGGT
AGGCCAGGAACTTATCAGAAGGTGTGCACCAACATTCTTCAAGCCAGAAC
CCACAAGCCTCCATCNTTTCTACCCNTGACAAGCCCACTCTCGCTTTCAT
GGCTCCTGGATCCTTTGACACACTCATTCATAAATATCTACTTGCTCTGG
ATAACTGAAGTATTCTCTTCAGGCTTAGTAACACTGAAGCCAACCAGGGG
GGCAGCTCATACAGACAGTTCTACCTGAGTTGAGGAGCCCACACTGCCCC
TCATGAAGTAAGAGGGTGAATGCCCTGGCTTTCCTGATAGGGCATGAATA
AGAAAGTTAAAGGGAAAACAATACTTACTGACATACAGAACCTTTCTACA
GAAACGACAAAGATGCATAGGCAAATGTGAGATTCTCCTGTCCTGCACCA
AGAGTCAATGGCCTTGAAAGCTAAAGGAACTGAAATCCTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCTCGCCAATAAACCTCAGGTCAAACAGTGCGCCAAGCCCTT
AAGGACTTGCTGAAAGTGAAACCAATCGGGCTGAAAAAGGAGACCCTGGA
GAACTTTTTAAAAGCAGTGGATCAGATGGCTCCTTGGTTCCCCGTATCAG
GGCATCTTACAGGGCCCAGTTGGGAGAAGTTAGGGAAGGACTTGAAGTTT
GCAGAAGAACAGGGAGTTCTCGCTAAAGGGGTGCTGCCAGTGTGGAAGCT
AATACGGAATTGTATCAAGGATAAGGAAAGATGTGGAGCGGAACTCCAAA
AGGGCAATGAGGCACTGAATCAGGTGAGAGAGGAGCGATCCCAAAGTCAG
AGACAGAAGGAAGTTCTACCCCCGCCGATATGTCTGAGGACGATCTGGAG
AGCATAGCCGACAGTCTAGAGAAAGTGAAAATGAAGGTAGAACCTTTAGT
GCCAGGGCTGCAGTGGCTGCCTCCGTTATGCCCAGACAGAGCATCGGGGC
GTAGTCTGCATCCAGAAACCAGGAGGGAACTGCAAGCTCAGTGCTTTTCT
GTATTTCAGGATGCGTAGGGAGGTCATTAAAGCCAGCACCTCGAGCGCCA
GAGAGTCTCACTTGATCAGGTGAAGCAGATAATGGTGCTGCTGGAGTAGT
AGTGTTCCCAGACAAGGTGCAAAAGGATGTTGTAGTGAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_d22.b1 MSMg01no164_d22.b1 CHROMAT_FILE:
MSMg01no164_d22.b1 PHD_FILE: MSMg01no164_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:02 2005
         (323 letters)



>mm_chr3_32859011_32859733
          Length = 723

 Score =  580 bits (300), Expect = e-170
 Identities = 315/320 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctccaactgcttcttatggtttaaagaaaacaagatgccttccaagcatctgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggaattcctccaactgcttcttatggtttaaagaaaacaagatgccttccaagcatctgg 464

                                                                       
Query: 64  aaagtgacacagatggtcacagctttgggcagctaacacagtgctagggaatattaacct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaagtgacacagatggtcacagctttgggcagctaacacagtgctagggaatattaacct 404

                                                                       
Query: 124 tcctgctgttagcagccatggggccctaggtgatccccagaagttcagcatcatcctgtt 183
           ||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 403 tcctgctgttatcagccatggggccctaggtgatccctaaaagttcagcatcatcctgtt 344

                                                                       
Query: 184 tccctgccagtgagaatcagggcactaaccactgtggcccacttcctttattcataattc 243
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 343 tccctgccagtgagaatcagggctctaaccactgtggcccacttcctttattcatgattc 284

                                                                       
Query: 244 tgaggtgaaataggtaggccaggaacttatcagaaggtgtgcaccaacattcttcaagcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgaggtgaaataggtaggccaggaacttatcagaaggtgtgcaccaacattcttcaagcc 224

                               
Query: 304 agaacccacaagcctccatc 323
           ||||||||||||||||||||
Sbjct: 223 agaacccacaagcctccatc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)