BAC Information

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BAC

Clone NameMSMg01-164F16
Chromosome3 (Build37)
Map Location 6,336,755 - 6,337,227
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570
Downstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164F16.T7 (MSMg01no164_f16.b1)MSMg01-164F16.TJ (MSMg01no164_f16.g1)
ACCAG362858AG362859
length774738
length of high quality
(start - end)
160 (45 - 204)606 (73 - 678)
definitionCHROMAT_FILE: MSMg01no164_f16.b1 PHD_FILE: MSMg01no164_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:11 2005CHROMAT_FILE: MSMg01no164_f16.g1 PHD_FILE: MSMg01no164_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATATAGACATTTGTCCACAGGCAAGAGCTGCATCATGTGAGTCCG
CAGCCCAAAGCTGCATTATGCCACAGGAGCAGGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA
ACACAATAACACCAAAGTTAGAAAAATTCTTACGTCAAGTAAATTTATGC
TGTGCTTGGTTCCCAGAATTAGGTATGGGTTATATACACTTGTCTTGATA
ATAGAGAGAAAGAGAGATAGTTTTTTTTTAGGTTTCATAAAAGCGGTTGT
CCCCTGTTTTTTTTAATAATTTTCCCCCCCCCCCCCCCAGCTCTCCTAGG
GTCTGGAGTTTTTTTGTTTTGCCCCCCCCCCTCCTGAATGATTCCTTCTG
GAGCTGTTCTTACTTCTGCTTATACCATGCTCTCTTCTCTCTCTGTCTAC
TGTCTGTCTTTGCTGCCCCTCTCTGTTTTTGTCCCCCCTTTCCCTGCTTT
TCTTTTGCTGTCCGTTTGTCCGCTCGTTTTCTGCCCTTTTCCCCCTTTCA
TTAACTGTCTTCTTTTTTTCATCCCTTTCTTCCCCCTTCCTTGTTTTTCT
TTTTTCTTTTTTCTCTTCCCCTTTTTCCCTACCTTTTCTCTGTCCCCATC
CTTGTTTCTTCTCTACCTTCTTTTCTTCCCTTTTTTCTTTTCTCTTTTTC
CCTTTCTCTCTTTTTTTCCCTTCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTTCCTCATCCTCTCCCAGATCCTCGC
CTGTTCTCCAATACAATGATCTCCATACATTCTTTATCTCTTCCTTTAGA
AAACAAATAGTCAAATGAAAGAAACAGGAGTGTAAAATAGAACAAAACAA
ACAAAAACAAAATAATAAAAAAATACACCTATATAAGCAGAGATACACAC
ACACACACACACACACACACACACACACACACACACAATCCCTACCCACA
TAAAGGTCGGAAACCATAATATATATGCAAAAAAAACAGTAAGGTTACAA
GCACACATAAGACAGAGCACATAATTACTAAATATCTGAGAAAGTACAAT
ATGCATTACTGTCCTGCCACAACTAATAACAAGAAAGAATTCTTCTTCCT
TATGTGTATCCCAGTGCCAAATTACACAAGGCATCAAGTAGTCAGACACC
TTTAATCTTCTCTAATTTGTATGAGTTTCACATTTCCTTATTTATATTTT
AATACGTTATGTAGTTATGTATGACTTTGACATTTTGAAGAATACAGATT
ATTTGTTTTGTAAAATGTTCCCCGATTTGCGCTTGTATAATATTTTCTTA
TTATTATATTCAAGTCCTACATTTTTAGAAGACAACCACAAAAGTGATAC
TGAGTCCTTTCTACTGAGTCATTAAAATTCAGGTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_f16.g1 MSMg01no164_f16.g1 CHROMAT_FILE:
MSMg01no164_f16.g1 PHD_FILE: MSMg01no164_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:11 2005
         (606 letters)



>mm_chr3_6336340_6337345
          Length = 1006

 Score =  808 bits (418), Expect = 0.0
 Identities = 461/476 (96%), Gaps = 4/476 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttcctcatcctctcccagatcctcgcctgttctccaatacaatgatctccatacattc 60
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 888 tgttcctcatcctctcccagatcctcccctattctccaatacaatgatctccatacattc 829

                                                                       
Query: 61  tttatctcttcctttagaaaacaaatagtcaaatgaaagaaacaggagtgtaaaatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 828 tttatctcttcctttagaaaacaaatagtcaaatgaaagaaacaggagtataaaatagaa 769

                                                                       
Query: 121 caaaacaaacaaaaacaaaataataaaaaaatacacctatataagcagagatacacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 768 caaaacaaacaaaaacaaaataataaaaaaatacacctatataagcagagat--acacac 711

                                                                       
Query: 181 acacacacacacacacacacacacacacacacacaatccctacccacataaaggtcggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 acacacacacacacacacacacacacacacacacaatccctacccacataaaggtcggaa 651

                                                                       
Query: 241 accataatatatatgc-aaaaaaaacagtaaggttacaagcacacataagacagagcaca 299
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 accataatatatatgcaaaaaaaaacagtaaggttacaagcacacataagacagagcaca 591

                                                                       
Query: 300 taattactaaatatctgagaaagtacaatatgcattactgtcctgccacaactaataaca 359
           |||||| | ||||||||||||||||||||||||||||||||||||  | || ||||||||
Sbjct: 590 taattaatgaatatctgagaaagtacaatatgcattactgtcctg-gataattaataaca 532

                                                                       
Query: 360 agaaagaattcttcttccttatgtgtatcccagtgccaaattacacaaggcatcaagtag 419
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 531 agaaagaattattcttccttatgtgtatcccagtgtcaaattacacaaggcatcaagtag 472

                                                                   
Query: 420 tcagacacctttaatcttctctaatttgtatgagtttcacatttccttatttatat 475
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 471 tcagacacctttaatcttctctaatttgtatgagtttcgcatttccttatttatat 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)