NCCTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTTTTAGTTATTTTTCATGTTTACATAAAAGAAAGTTG
TTACGTGTATCACTGAAAGTTTCTATCACTACATTCCCCAAATCAGAAGA
AATAGGCACCATGTAATTTCTTTTCCACTACTGTTTAGGATATGATCTTG
CAACTCGTTCATTCTGCAACTCACATCTCAACATACATAAGTATATCTTG
TGATCCAAAATATATTGTGCATGATGAATATAAATACAAAAGGACATGAA
AACCATGAGGAGTGTACAGAAATTTAATACAAAGACAGACATGAAGGTTT
ATTAAAATCAGTACAGGTAATAAGTATGAAAACGACGGCAGTTATATAGT
ATATATTTGATCTATTTTAGGGGAAAGAAAGACTTTCAGAGGATTTAATG
TCAGATCTGAGTCCTACAGTGTAGGTAGATGAGAGATTATCTATGATAAG
CACTTTACTTTCTGATCATTCTTGTAGAAGCAAAAATCCATAGATGGAAT
GGATTGGCATGAAATTTTTCAGTGGCTCAGAAGTAGGTCATGTTCATGTA
CAAAGTGGTTGTACTTGGGTATGTATATATATCATGGATCTTGAAAACTA
AATAATAAGGAACAAAACCATAGACTGAGAGGGGTATTGACTAAATAGTA
TTAAAATTACCTATGCTGA

NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAGTATGAGGGAGGTTTTGA
GAAATACAGGAGGAGTTAGAGGTGAGACAAGGGAGGAAGGCATGAAAATA
TATTTTATTCATGTATAAAATTCTTAGGAGAAAATTAATTTAAATTATAC
AAACAAAGCAAAACAAAAAGTATGCACTGGTGTTCTAGAAATGAGTGCTT
CAGACTCACTTTGCTTTCTGCACATTGTTCAGTTTGGGTCCCTCTGTTTT
CCTCTAGGGTCATGACATATCCAGTCTTGAGGTCTTGACCACCTTAGCAA
TGTTGGATATGCTTTGCATCTCATGGAGTGGATATGGGTTACATGCAAAC
AAAAAGTGTTCAGTTACTCCTGCAACATTTGGGCTACTGTTGCACCACTA
TGTTCTGCATTCAGGTAGCTGATATAAACTGTAGGGTTTGTAGCTGGGTG
GTATTAATCATCACTATTCTCTGGTATATGCAAGCAGAGTGCCTTCCAAT
ACCATGAAGACTACTCAGAAGGGTTTTCTAGTCAGGTAACAGCATAACCT
CTCCATCTTCTAGTGCTTTAGTAAATGTAGTAATAGGGCCCTACCATTGG
GTTATGGAGAACAGCAAATAGCTTTGACAATTGCCTGTGAAGGGGGTGAC
TTATTGCGCACTCTGG

Query= MSMg01no164_j02.b1 MSMg01no164_j02.b1 CHROMAT_FILE:
MSMg01no164_j02.b1 PHD_FILE: MSMg01no164_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:27 2005
         (321 letters)



>mm_chr3_113894364_113895084
          Length = 721

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttttagttatttttcatgtttacataaaagaaagttgttacgtgtatcactg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcagttttagttatttttcatgtttacataaaagaaagttgttacgtgtatcactg 460

                                                                       
Query: 65  aaagtttctatcactacattccccaaatcagaagaaataggcaccatgtaatttcttttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaagtttctatcactacattccccaaatcagaagaaataggcaccatgtaatttcttttc 400

                                                                       
Query: 125 cactactgtttaggatatgatcttgcaactcgttcattctgcaactcacatctcaacata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cactactgtttaggatatgatcttgcaactcgttcattctgcaactcacatctcaacata 340

                                                                       
Query: 185 cataagtatatcttgtgatccaaaatatattgtgcatgatgaatataaatacaaaaggac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cataagtatatcttgtgatccaaaatatattgtgcatgatgaatataaatacaaaaggac 280

                                                                       
Query: 245 atgaaaaccatgaggagtgtacagaaatttaatacaaagacagacatgaaggtttattaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atgaaaaccatgaggagtgtacagaaatttaatacaaagacagacatgaaggtttattaa 220

                          
Query: 305 aatcagtacaggtaa 319
           |||||||||||||||
Sbjct: 219 aatcagtacaggtaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no164_j02.g1 MSMg01no164_j02.g1 CHROMAT_FILE:
MSMg01no164_j02.g1 PHD_FILE: MSMg01no164_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:28 2005
         (504 letters)



>mm_chr3_113748811_113749714
          Length = 904

 Score =  920 bits (476), Expect = 0.0
 Identities = 497/504 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagtatgagggaggttttgagaaatacaggaggagttagaggtgagacaagggaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgagtatgagggaggttttgagaaatacaggaggagttagaggtgagacaagggaggaa 260

                                                                       
Query: 61  ggcatgaaaatatattttattcatgtataaaattcttaggagaaaattaatttaaattat 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ggcaggaaaatatattttattcatgtataaaattcttaggagaaaattaacttaaattat 320

                                                                       
Query: 121 acaaacaaagcaaaacaaaaagtatgcactggtgttctagaaatgagtgcttcagactca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 321 acaaacaaagcaaaacaaaaagtatgcactggtgttctagaaatgagtgcttcaaactta 380

                                                                       
Query: 181 ctttgctttctgcacattgttcagtttgggtccctctgttttcctctagggtcatgacat 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 ctttgctttctgcacattgttcagtttgggtccctctgttttcttctagggtcatgacat 440

                                                                       
Query: 241 atccagtcttgaggtcttgaccaccttagcaatgttggatatgctttgcatctcatggag 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 atccagtcttgaggtcttgaccaccttagcaatgttggatatggtttgcatctcatggag 500

                                                                       
Query: 301 tggatatgggttacatgcaaacaaaaagtgttcagttactcctgcaacatttgggctact 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tggatatgggttacatgcaaacaaaaagtgttcagttactcctgtaacatttgggctact 560

                                                                       
Query: 361 gttgcaccactatgttctgcattcaggtagctgatataaactgtagggtttgtagctggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttgcaccactatgttctgcattcaggtagctgatataaactgtagggtttgtagctggg 620

                                                                       
Query: 421 tggtattaatcatcactattctctggtatatgcaagcagagtgccttccaataccatgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtattaatcatcactattctctggtatatgcaagcagagtgccttccaataccatgaa 680

                                   
Query: 481 gactactcagaagggttttctagt 504
           ||||||||||||||||||||||||
Sbjct: 681 gactactcagaagggttttctagt 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)