BAC Information

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BAC

Clone NameMSMg01-165D06
Chromosome3 (Build37)
Map Location 124,110,545 - 124,256,104
singlet/doubletdoublet
Overlap gene1700006A11Rik
Upstream genePrss12, EG668804, Ndst3, LOC100043333, EG668809, Tram1l1, LOC100043740
Downstream gene1700003H04Rik, LOC668817, LOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165D06.T7 (MSMg01no165_d06.b1)MSMg01-165D06.TJ (MSMg01no165_d06.g1)
ACCAG363433AG363434
length710709
length of high quality
(start - end)		666 (45 - 710)636 (74 - 709)
definitionCHROMAT_FILE: MSMg01no165_d06.b1 PHD_FILE: MSMg01no165_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:16 2005CHROMAT_FILE: MSMg01no165_d06.g1 PHD_FILE: MSMg01no165_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,255,494 - 124,256,104)(124,110,545 - 124,111,180)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGATCCGCG
GAATTCATGGGTATACCTTAAATTTCATATATAGAAAAAAAGTATCAAAG
CAAAATTCCTAGTCTTCTAGCTCTTATCATCTTTCCATATCTTTTTCTAT
AATTTTTATTGATCCTCACTTGTATGCACTGGTGCTAGGCAGCACACAAT
TAGCTTTCCTCTACATTCTGGTCAGCTTTGCCTTTCTGTAATGGTCTCAT
TCTGAAAGAAAGCTTTTTGTTGATGGGTGAGATCCGTACTTACCTGTGGG
TGGAGAAATAAACATTTAAAATTCAGTTAGGAATTAATTTAGGGAAAACA
CAACATATGTTCTTCTTTAATATCCACATAGAGTAGGCTAGGTGTACATT
GCCAGCACAGTTTCTGCCATGTTTACCATGTCTTCATTCTGAATTTGTGT
TCATTCAACAGAATTATCATAGTGGATTTTACACTAGGAATTACAACTGT
TCTGTGTGATGATGGGGATAAATATGCTTTTCACCCTTTGGAAATGGCCT
TACATTAAAACACGCTGTTCAGTTACTCTCATTATGTTTATGCTGTTTTG
TATCATTGAATATATTTTGCTAGGTTAATCATTATGTAGCTTTTACAGTT
TACACTGGGTATGTGTAAATACCTAAAATTATTATAAAGATATAATTATT
TTGCTCATCT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGATCAAGGACAGCAAGCCATTTTCC
ATACAGATTAGAGCAAAGTAAGCTTCCTGGAATATTCCTAATAAATTCCT
TACATATATAAAAATGTAATTGTCAGTATACTTTGATGAAATTATTGGAA
ATCATTTTTATTGAGGAATATCAGTTTAAATGTAATTTCTTAAGATATTC
TCTGCCTGACATCATCCAGAATCTCACCTCAAAGTCGACCAAAGGACCCA
GAAAGTGTAGATTTTCTCACCGAGAAGTGGAGTCTAAGAAACAGAGTTCT
GGACATGGTGGCAATAAAATGAACTTATTCTCAGTTCAAAGGACTTTACT
TGGACATAAGCAGCTACTAAAAATAAACAGGGATATTACGATTCTATCCT
TCGTTGACTAGGTTTGAATTCCTAGTTGAGTAAAGTTCTAATATGCACAT
GCGCCCTTGCTTGCAGATACAGTGGAGAAGGGCCCAGCCTCCTGATCTGA
GCTCCCTGGGTTCCATGTGAAAAGCTCTGATAGTTTCACATTCCCTTAAC
TGTATAAGAATTCAGCTCTTTACATTGTAAGCAGCACATTGTTTGATGGA
CAGCCAAATCATTTTATTTTGCTCCTTCCAAACCTCATATTTTATCACAT
ATGCTCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_d06.b1 MSMg01no165_d06.b1 CHROMAT_FILE:
MSMg01no165_d06.b1 PHD_FILE: MSMg01no165_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:16 2005
         (666 letters)



>mm_chr3_124255039_124256104
          Length = 1066

 Score = 1096 bits (567), Expect = 0.0
 Identities = 600/611 (98%)
 Strand = Plus / Minus

                                                                        
Query: 56   gcaaaattcctagtcttctagctcttatcatctttccatatctttttctataatttttat 115
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 gcaaaatttctagtcttctagctcttatcatctttccatatctttttctataatttttat 1007

                                                                        
Query: 116  tgatcctcacttgtatgcactggtgctaggcagcacacaattagctttcctctacattct 175
            ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1006 tgatcctcacttgtaagcactggtgctaggcagcacacaattggctttcctctacattct 947

                                                                        
Query: 176  ggtcagctttgcctttctgtaatggtctcattctgaaagaaagctttttgttgatgggtg 235
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 946  ggtcagctttgcctttctgtaatggtctcaatctgaaagaaagctttttgttgatgggtg 887

                                                                        
Query: 236  agatccgtacttacctgtgggtggagaaataaacatttaaaattcagttaggaattaatt 295
            ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 886  agatctgtacttacctgtgggtggagaaataaacatttagaattcagttaggaattaatt 827

                                                                        
Query: 296  tagggaaaacacaacatatgttcttctttaatatccacatagagtaggctaggtgtacat 355
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  tagggaaaacacaacctatgttcttctttaatatccacatagagtaggctaggtgtacat 767

                                                                        
Query: 356  tgccagcacagtttctgccatgtttaccatgtcttcattctgaatttgtgttcattcaac 415
            ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  tgccagcacagtttccgctatgtttaccatgtcttcattctgaatttgtgttcattcaac 707

                                                                        
Query: 416  agaattatcatagtggattttacactaggaattacaactgttctgtgtgatgatggggat 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706  agaattatcatagtggattttacactaggaattacaactgttctgtgtgatgatggggat 647

                                                                        
Query: 476  aaatatgcttttcaccctttggaaatggccttacattaaaacacgctgttcagttactct 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 646  aaatatgcttttcaccctttggaaatggccttacattaaaacacgctgttcagtttctct 587

                                                                        
Query: 536  cattatgtttatgctgttttgtatcattgaatatattttgctaggttaatcattatgtag 595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586  cattatgtttatgctgttttgtatcattgaatatattttgctaggttaatcattatgtag 527

                                                                        
Query: 596  cttttacagtttacactgggtatgtgtaaatacctaaaattattataaagatataattat 655
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 526  cttttacagtttacactgggtatgtgtaaatacctaaaattattatgaagatataattat 467

                       
Query: 656  tttgctcatct 666
            |||||||||||
Sbjct: 466  tttgctcatct 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no165_d06.g1 MSMg01no165_d06.g1 CHROMAT_FILE:
MSMg01no165_d06.g1 PHD_FILE: MSMg01no165_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:16 2005
         (636 letters)



>mm_chr3_124110345_124111380
          Length = 1036

 Score = 1214 bits (628), Expect = 0.0
 Identities = 634/636 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatcaaggacagcaagccattttccatacagattagagcaaagtaagcttcctggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgatcaaggacagcaagccattttccatacagattagagcaaagtaagcttcctggaat 260

                                                                       
Query: 61  attcctaataaattccttacatatataaaaatgtaattgtcagtatactttgatgaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcctaataaattccttacatatataaaaatgtaattgtcagtatactttgatgaaatt 320

                                                                       
Query: 121 attggaaatcatttttattgaggaatatcagtttaaatgtaatttcttaagatattctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggaaatcatttttattgaggaatatcagtttaaatgtaatttcttaagatattctct 380

                                                                       
Query: 181 gcctgacatcatccagaatctcacctcaaagtcgaccaaaggacccagaaagtgtagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 gcctgacatcatccagaatctcacctcaaagtcgaccaaaggacccagaaagtgtagctt 440

                                                                       
Query: 241 ttctcaccgagaagtggagtctaagaaacagagttctggacatggtggcaataaaatgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctcaccgagaagtggagtctaagaaacagagttctggacatggtggcaataaaatgaa 500

                                                                       
Query: 301 cttattctcagttcaaaggactttacttggacataagcagctactaaaaataaacaggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttattctcagttcaaaggactttacttggacataagcagctactaaaaataaacaggga 560

                                                                       
Query: 361 tattacgattctatccttcgttgactaggtttgaattcctagttgagtaaagttctaata 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattacgattctatcctttgttgactaggtttgaattcctagttgagtaaagttctaata 620

                                                                       
Query: 421 tgcacatgcgcccttgcttgcagatacagtggagaagggcccagcctcctgatctgagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcacatgcgcccttgcttgcagatacagtggagaagggcccagcctcctgatctgagct 680

                                                                       
Query: 481 ccctgggttccatgtgaaaagctctgatagtttcacattcccttaactgtataagaattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccctgggttccatgtgaaaagctctgatagtttcacattcccttaactgtataagaattc 740

                                                                       
Query: 541 agctctttacattgtaagcagcacattgtttgatggacagccaaatcattttattttgct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agctctttacattgtaagcagcacattgtttgatggacagccaaatcattttattttgct 800

                                               
Query: 601 ccttccaaacctcatattttatcacatatgctcaga 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccttccaaacctcatattttatcacatatgctcaga 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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