BAC Information

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BAC

Clone NameMSMg01-165E07
Chromosome3 (Build37)
Map Location 151,073,352 - 151,074,008
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165E07.T7 (MSMg01no165_e07.b1)MSMg01-165E07.TJ (MSMg01no165_e07.g1)
ACCAG363478AG363479
length729727
length of high quality
(start - end)
566 (30 - 595)653 (75 - 727)
definitionCHROMAT_FILE: MSMg01no165_e07.b1 PHD_FILE: MSMg01no165_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:21 2005CHROMAT_FILE: MSMg01no165_e07.g1 PHD_FILE: MSMg01no165_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CATAGTTTTTCTGATGGCCACAGGATGACAAGTTCGGGGAACCACACTGC
TGGAGGATGGGCTCTGGCCCGGGGCCGAAAGGAAAAGAGCAGGGAGGAGA
GAGCTCCCTCAGGTTCCCATGGGGAGGAGAGTCCTTAGCTTGTTTGGGCA
GCTTGGCTTGGGTTGGCTGCCAGTCCTGGCTGGAGCCCAGGAAAGCCTCT
TGGTGGGCTCATTAGGGGAAGACTTGCCCGATTGCTCCAGCAAGGTGGAT
CCCAATGAGAAGAGGCAGTCCATGGATGTAAGGTGTTTATTGTACAAAGG
CAGAGAAAGGGAGAAGAGTAGAAATGTAGAGGCTGGCCATGAGCATGTAG
AGAGAAGGGATAAGGCAAGGCAGAGAGAGGGGGAACAAGAGGGCAAGAGA
AAGAGGTAAGAGAGTAAGAAAGGGAGGAGGGGGCAAACTGCTCCCTTTAT
AATGGGCTGGGCCTACCTGTCTGTTGCCAAGTAACTGTGGGGGTGGAGTC
CAGACAAAATACCAGAATCTTGGGGCATTGCCTAAGTGACTGGTGGGCAC
AGAATTATGGAGCTGGGGCTTCGTTGCAAGAGCCTAGTGCCTGGGAGAGC
GTAGTATTCTTCTTTCCATTCCTTGCAGATTAATCTGCTAGGCCTCCGGG
TTTTACACTGAAGTCAACCAGAAATCGGT
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATATGAACTGTATAAAACTGACATAT
TATTCAATTAAATAGCATAAGAACTCAGGAATAGATTTCCATTTCATTTT
TCTAAAATATTTACTCCCATTATATGCTAAATAAACTTCAAAATGTTTTC
ATTTTTGAACACATTATAAAATCAAAGACCCATTATAAAATTGCTGAAAG
GAATTCATATAATTGTATGTGTCTTTTAGTAAATAAACTAATTTTTCTAA
AGTAAAATATGCATGTAAGTGAAATAGACTATAATTAATTCTGGATATCT
TGTGGATAGAATTTGACTGACTTGTTATTCTTTGAACCCGGGGGGGGATC
ACTATTTTTAAACATTATAATAATGTGCATTTTAAGCTTTGATATTGCAT
TTGAAACACAAGTATCGCCTGTTAAGAAGTAGTGCTCAATATCTAAAAGG
TGAAGTGAAGAATCATTTGCTTAAATATTTAATTAGGGGTAAACAATAAA
TGCTTTTCTCACTTTTATATGTTAATACACAGTGCAACGCTTTCCAATAG
CTATGTGTTTTAAGTTAGTCATTAACTTAAGAAAATTCTATTTTCAACTT
AAATTGACATGAGTTATGATAAGTGCCTCTTTTTATTTATCTAGGAGTGT
TTCATAAAATCCCCGAAGCCTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_e07.g1 MSMg01no165_e07.g1 CHROMAT_FILE:
MSMg01no165_e07.g1 PHD_FILE: MSMg01no165_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:21 2005
         (653 letters)



>mm_chr3_151073152_151074208
          Length = 1057

 Score = 1251 bits (647), Expect = 0.0
 Identities = 653/657 (99%), Gaps = 4/657 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatgaactgtataaaactgacatattattcaattaaatagcataagaactcaggaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 atatgaactgtataaaactgacatattattcaattaaatagcataagaactcaggaatag 798

                                                                       
Query: 61  atttccatttcatttttctaaaatatttactcccattatatgctaaataaacttcaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atttccatttcatttttctaaaatatttactcccattatatgctaaataaacttcaaaat 738

                                                                       
Query: 121 gttttcatttttgaacacattataaaatcaaagacccattataaaattgctgaaaggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gttttcatttttgaacacattataaaatcaaagacccattataaaattgctgaaaggaat 678

                                                                       
Query: 181 tcatataattgtatgtgtcttttagtaaataaactaatttttctaaagtaaaatatgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tcatataattgtatgtgtcttttagtaaataaactaatttttctaaagtaaaatatgcat 618

                                                                       
Query: 241 gtaagtgaaatagactataattaattctggatatcttgtggatagaatttgactgacttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtaagtgaaatagactataattaattctggatatcttgtggatagaatttgactgacttg 558

                                                                       
Query: 301 ttattctttgaaccc----ggggggggatcactatttttaaacattataataatgtgcat 356
           |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttattctttgaacccggggggggggggatcactatttttaaacattataataatgtgcat 498

                                                                       
Query: 357 tttaagctttgatattgcatttgaaacacaagtatcgcctgttaagaagtagtgctcaat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttaagctttgatattgcatttgaaacacaagtatcgcctgttaagaagtagtgctcaat 438

                                                                       
Query: 417 atctaaaaggtgaagtgaagaatcatttgcttaaatatttaattaggggtaaacaataaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atctaaaaggtgaagtgaagaatcatttgcttaaatatttaattaggggtaaacaataaa 378

                                                                       
Query: 477 tgcttttctcacttttatatgttaatacacagtgcaacgctttccaatagctatgtgttt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgcttttctcacttttatatgttaatacacagtgcaacgctttccaatagctatgtgttt 318

                                                                       
Query: 537 taagttagtcattaacttaagaaaattctattttcaacttaaattgacatgagttatgat 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taagttagtcattaacttaagaaaattctattttcaacttaaattgacatgagttatgat 258

                                                                    
Query: 597 aagtgcctctttttatttatctaggagtgtttcataaaatccccgaagccttttctc 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagtgcctctttttatttatctaggagtgtttcataaaatccccgaagccttttctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1057
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1047
Effective search space:   673221
Effective search space used:   673221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)