BAC Information

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BAC

Clone NameMSMg01-165N12
Chromosome3 (Build37)
Map Location 136,763,585 - 136,938,540
singlet/doubletdoublet
Overlap genenone
Upstream geneBank1, LOC100039477, LOC668868, Ppp3ca, LOC668870
Downstream geneLOC100039447, Emcn, EG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165N12.T7 (MSMg01no165_n12.b1)MSMg01-165N12.TJ (MSMg01no165_n12.g1)
ACCAG363859AG363860
length704707
length of high quality
(start - end)		666 (39 - 704)530 (75 - 604)
definitionCHROMAT_FILE: MSMg01no165_n12.b1 PHD_FILE: MSMg01no165_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:09 2005CHROMAT_FILE: MSMg01no165_n12.g1 PHD_FILE: MSMg01no165_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,938,304 - 136,938,540)(136,763,585 - 136,764,114)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAA
TTCACCCTGTGCCTACACAGGCAGGCACGCAGGTCACAGTCCAAGCAGGA
GAGAGTCAGGGCTGTGGAATCTGCCTGGAACTGACAAGAACCTTCCCTTA
AACTAAAGCTGACCCAATTTTATGTGGAAGAATTGTTTGCTTTTCGTTAT
TAGGCTGCTCAATGGATTTTCCACTTCATTTTTAAAATTACCGTAGACAT
CTTCATGGATATAATAGTCTTATGGCCTTGTTTCCCAACTAAACCATGAC
CCACAGGCTCCTCTGATACAAAAGGTAGTCCTTTAAGTTTACAGATGTAA
TTTTTATTATTGTATTTCTCAGCTACACTACTAGCTGAGTGTACTTTTAA
TTGTGGCAGAAAATTAATAACCTCATGGAGATCAATGTCGCGATCACAGA
AAAATGAACCACGTGGCACACCAAGTTTTCATATAATCCTCCAAACTTAT
CACACAGCCTTGTGACAGCAGGTGATTCTGCATGGTCATATGCCTATCAC
ATGATTTTATAGTTTCCACTATGGGTTACTCTTAGTCCAATCAATGAGTT
TGGATAAGTGCATGTTGATGTCTTTCTACCATGATGGCCTCATCATAACT
GTCCTGGAAGTCCTCTGCAAAGCCACCTACCTACTGGTCCTTTCCTCACC
ATGC

ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGCACAAGAAAACAAAAATGCTGT
ATTTCTTCCCTCTAATCTCCCAGAACCGGCTGAAGGTAATAGGAGAGCTG
AAGCTTTGCTCCTTAGCTTCCTGCACTGGTGAAGCATCGCCCTCTCTCTA
TTTGCTGTACCAAAGACTTGGCTCCTGTTGCTGAGCAAGCCATATGGTTA
TCAGGCAGAAAACGTGCAACAGTTTCTCTCCTTTTGCTGTCAGTGAGTTG
CAGAGCTTAAGGCTACTATTTTGGGAAAAGATTCAGGAAGTTTTGCAAGC
TATAGCAAGCAGACCCTGGGCTCCCTGTGGCTGAGGAGAGAAGATGCTAC
AGCTCAGGGAGTTTCCTAAGCAGCAAATACTGATATTCTATCACTGGCTC
ATCCCATGGAGAGGGAGGTCATCTGGACATGCAAATGATTTAAAAATAGA
CATATTATTATATTAGGTTTGATAATGATGTAATCTATTTCCCATTCAAT
TCATTCTTGTAGCTTAAATAATATGTGGTAGTGAGGCTGTGAGTAGCCAC
TGATTAAAGGGTACAGAAGCAGTAATACCCCAGCTAGAGGCTGATGCCTT
GCTGGAGCAGAGAACACCCTCAGCTTTGCTTTGAGCTATTAATTAACGAA
CCAGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_n12.b1 MSMg01no165_n12.b1 CHROMAT_FILE:
MSMg01no165_n12.b1 PHD_FILE: MSMg01no165_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:09 2005
         (666 letters)



>mm_chr3_136938096_136939161
          Length = 1066

 Score =  412 bits (213), Expect = e-119
 Identities = 231/237 (97%)
 Strand = Plus / Minus

                                                                       
Query: 9   ggaattcaccctgtgcctacacaggcaggcacgcaggtcacagtccaagcaggagagagt 68
           ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 ggaattcacccagtgtctacacaggcaagcacgcaggtcacagtccaagcaggagagagt 386

                                                                       
Query: 69  cagggctgtggaatctgcctggaactgacaagaaccttcccttaaactaaagctgaccca 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagggctgtggaatctgcctggaactgacaagaaccttcccttaaactaaagctgaccca 326

                                                                       
Query: 129 attttatgtggaagaattgtttgcttttcgttattaggctgctcaatggattttccactt 188
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 attttatgtggaagaattgttttcttttcgttattaggctgctcaatggattttccactt 266

                                                                    
Query: 189 catttttaaaattaccgtagacatcttcatggatataatagtcttatggccttgttt 245
           ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 cattttttaaattaccgtagacatcttcatggatatgatagtcttatggccttgttt 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no165_n12.g1 MSMg01no165_n12.g1 CHROMAT_FILE:
MSMg01no165_n12.g1 PHD_FILE: MSMg01no165_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:09 2005
         (530 letters)



>mm_chr3_136763385_136764314
          Length = 930

 Score =  971 bits (502), Expect = 0.0
 Identities = 523/530 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcacaagaaaacaaaaatgctgtatttcttccctctaatctcccagaaccggctgaa 60
           |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 201 tttgcacaagaaaacagaaatgctgtgtttcttccctctaatctctcagaaccggctgaa 260

                                                                       
Query: 61  ggtaataggagagctgaagctttgctccttagcttcctgcactggtgaagcatcgccctc 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgataggagagctgaagctttgctccttagcttcctgcactggtgaagcatcgccctc 320

                                                                       
Query: 121 tctctatttgctgtaccaaagacttggctcctgttgctgagcaagccatatggttatcag 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctgtttgctgtaccaaagacttggctcctgttgctgagcaagccatatggttatcag 380

                                                                       
Query: 181 gcagaaaacgtgcaacagtttctctccttttgctgtcagtgagttgcagagcttaaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagaaaacgtgcaacagtttctctccttttgctgtcagtgagttgcagagcttaaggct 440

                                                                       
Query: 241 actattttgggaaaagattcaggaagttttgcaagctatagcaagcagaccctgggctcc 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaattttgggaaaagattcaggaagttttgcaagctatagcaagcagaccctgggctcc 500

                                                                       
Query: 301 ctgtggctgaggagagaagatgctacagctcagggagtttcctaagcagcaaatactgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtggctgaggagagaagatgctacagctcagggagtttcctaagcagcaaatactgat 560

                                                                       
Query: 361 attctatcactggctcatcccatggagagggaggtcatctggacatgcaaatgatttaaa 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 attctatcactggctcatcccatggagtgggaggtcatctggacatgcaaatgatttaaa 620

                                                                       
Query: 421 aatagacatattattatattaggtttgataatgatgtaatctatttcccattcaattcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatagacatattattatattaggtttgataatgatgtaatctatttcccattcaattcat 680

                                                             
Query: 481 tcttgtagcttaaataatatgtggtagtgaggctgtgagtagccactgat 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttgtagcttaaataatatgtggtagtgaggctgtgagtagccactgat 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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