Query= MSMg01no166_f22.b1 MSMg01no166_f22.b1 CHROMAT_FILE:
MSMg01no166_f22.b1 PHD_FILE: MSMg01no166_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:51 2005
(494 letters)
>mm_chr3_83409940_83410834
Length = 895
Score = 855 bits (442), Expect = 0.0
Identities = 474/488 (97%), Gaps = 7/488 (1%)
Strand = Plus / Minus
Query: 11 tcattggccttatctcttctactcaaaatctgggagagtcagggagattgcaaggtttgt 70
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tcattggccttatgtcttctactcaaaatctgggagagtcagggagattgcaaggtttgt 636
Query: 71 catcagctagcatttagggtttgcagaacacagagaaaaacccagcttagctgtctagga 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 catcagctagcatttagggtttgcagaacacagagaaaaacccagcttagctgtctagga 576
Query: 131 tggctagtttccaatttcagactttcaccagagtctctcttgaatgtgtgtctaatgttg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tggctagtttccaatttcagactttcaccagagtctctcttgaatgtgtgtctaatgttg 516
Query: 191 tgggctccaggagaaaaggcatgcatcctttgaaactaatagggagcaagctttagatca 250
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 515 tgggctccaggagaaaagacatgcgtcctttgaaactaatagggagcaagctttagatca 456
Query: 251 aactgtgtagccatgaacttacttttgattttgaagaatatggaagaagatatttgtttc 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aactgtgtagccatgaacttacttttgattttgaagaatatggaagaagatatttgtttc 396
Query: 311 ctgagaatttatagcttaaccctgagagttcaaggtgcattttgtagctaggcgagttat 370
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 395 ctgagaatttatagcttaaccctgagagttcaaggtgccttttgtagctaggtgagttat 336
Query: 371 tcaaaaccccttt----aggaatggaattctcaaatatggatcaggggagacaccatagg 426
||||||| ||| ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 335 tcaaaac---tttttttaggaatggaatcctcaaatatggatcagggaagacaccatagg 279
Query: 427 acatagtagtttgaggaggtgagaaaattagaagagaggagagaaggaagggcaggcagg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 acatagtagtttgaggaggtgagaaaattagaagagaggagagaaggaagggcaggcagg 219
Query: 487 aaagagtg 494
||||||||
Sbjct: 218 aaagagtg 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 895
Length adjustment: 10
Effective length of query: 484
Effective length of database: 885
Effective search space: 428340
Effective search space used: 428340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_f22.g1 MSMg01no166_f22.g1 CHROMAT_FILE:
MSMg01no166_f22.g1 PHD_FILE: MSMg01no166_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:51 2005
(343 letters)
>mm_chr3_83262692_83263433
Length = 742
Score = 470 bits (243), Expect = e-137
Identities = 296/341 (86%), Gaps = 43/341 (12%)
Strand = Plus / Plus
Query: 1 tcagggactctcttcccaactgctgccaccaaattttctttagaaaatttctttctacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagggactctcttcccaactgctgccaccaaattttctttagaaaatttctttctacat 260
Query: 61 tgaaaacatgcccagattttggaaagcaacaagcaatcaggtatattttttttcctctgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgaaaacatgcccagattttggaaagcaacaagcaatcaggtatattttttt-cctctgt 319
Query: 121 tttttgccaatctcagttgactatttaaagtaaactaatttttcccacttaaattgtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttttgccaatctcagttgactatttaaagtaaactaatttttcccacttaaattgtaaa 379
Query: 181 ggtctatccaacagtggtttctctctctctctctctctctctctctctctctctctctct 240
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtctatccaacagtggtttctctctctctctctctctctct------------------ 421
Query: 241 ctctctctctctctctctccccctgtttatataatttaggtgtgtgcatatgtgtagacg 300
||||||||||||||||||||||| |||||||||| |
Sbjct: 422 ------------------------gtttatataatttaggtgtgtgcgtatgtgtagatg 457
Query: 301 gtatgtatgtttggtgtgtgcatattcaagcatatgatatg 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtatgtatgtttggtgtgtgcatattcaagcatatgatatg 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 742
Length adjustment: 9
Effective length of query: 334
Effective length of database: 733
Effective search space: 244822
Effective search space used: 244822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
