Query= MSMg01no166_h02.b1 MSMg01no166_h02.b1 CHROMAT_FILE:
MSMg01no166_h02.b1 PHD_FILE: MSMg01no166_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:57 2005
(245 letters)
>mm_chr3_126828919_126829563
Length = 645
Score = 431 bits (223), Expect = e-125
Identities = 238/247 (96%), Gaps = 8/247 (3%)
Strand = Plus / Plus
Query: 1 aacgtttctgtctttttctcttgggttcttagggcctggggaagatgtccagtccacaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aacgtttctgtctttttctcttgggttcttagggcctggggaagatgtacagtccacaaa 260
Query: 61 gacttacaagggatatttgttaactatccatgagatattcagaatataagccaggatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacttacaagggatatttgttaactatccatgagatattcagaatataagccaggatttc 320
Query: 121 tggctgctgaaagagaatgtactcccccacactttataattcatttaacatttttgagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctgctgaaagagaatgtactcccccacactttataattcatttaacatttttgagat 380
Query: 181 atttt----agttcaacatttgacctaatgtttaatatagaattatgcaactttcagggc 236
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 a----gaaaagttcaacatttgacctaatgtttaatatagaattatgcaactttcagggc 436
Query: 237 tggaagg 243
|||||||
Sbjct: 437 tggaagg 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no166_h02.g1 MSMg01no166_h02.g1 CHROMAT_FILE:
MSMg01no166_h02.g1 PHD_FILE: MSMg01no166_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:57 2005
(337 letters)
>mm_chr3_127012760_127013494
Length = 735
Score = 598 bits (309), Expect = e-175
Identities = 330/339 (97%), Gaps = 6/339 (1%)
Strand = Plus / Minus
Query: 1 agaggacagcgtttggttgtcagttttctttttctgtacattctagggctcaaactccga 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agagggcagcgtttggttgtcagttttctttttctgtacattctagggctcaaactccga 589
Query: 61 tcttcag--gtgtgtgcagagagagcctttactaccgagccatctcactggcccccataa 118
||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 588 tcttcaggcgtgtgtg--gagagagcctttactactgagccatctcactggcccccataa 531
Query: 119 tctccttttaaagaactgtttaattaatgttttcaaaaagaaatcagataaagtaattgc 178
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 530 tctccttttaaagaactgtttaatgaatgttttcaaaaagaaatcagataaagtaattgc 471
Query: 179 tttttttagtttattttcctttctagtttgtgattaatttcttatttgttgttactgcca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tttttttagtttattttcctttctagtttgtgattaatttcttatttgttgttactgcca 411
Query: 239 cctagtgggtgaaaattcatttacctttttttatttgagattgtagcttgtttttgtttg 298
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 410 cctagtgggtgaaaattcatttacctttttttatttgagattgtagcttg--tttgtttg 353
Query: 299 ttttttcttacagatggctatttcagaagtgaaacaaac 337
|||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttttttcttacagatggctatttcagaagtgaaacaaac 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 735
Length adjustment: 9
Effective length of query: 328
Effective length of database: 726
Effective search space: 238128
Effective search space used: 238128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
