BAC Information

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BAC

Clone NameMSMg01-166H05
Chromosome3 (Build37)
Map Location 132,165,513 - 132,165,759
singlet/doubletsinglet
Overlap genenone
Upstream genePapss1, Olfr375-ps1, Dkk2, LOC100039018
Downstream geneEG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166H05.T7 (MSMg01no166_h05.b1)MSMg01-166H05.TJ (MSMg01no166_h05.g1)
ACCAG364271AG364272
length790821
length of high quality
(start - end)
278 (48 - 325)269 (77 - 345)
definitionCHROMAT_FILE: MSMg01no166_h05.b1 PHD_FILE: MSMg01no166_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:57 2005CHROMAT_FILE: MSMg01no166_h05.g1 PHD_FILE: MSMg01no166_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAACCGC
GGAATTCCAGACAGTCTTACCATTGACTGTCATATGGTTATTATATCTTA
AACAGATCTACAGATGAGCAAGCAGGACACATAGATGTAGTAAACATACA
GTTTTGAGGAGAAAAGTAACACCAGGGAATGTAATATTGGAACCAAGTCC
TGTGCTCAGGGAAATAAAAGGTTTAAAGAAAGGCCTGATTCAAAAAAGGA
ATACAAGCAGTGGTGCCCCTAGGGTAAGAGACCACCCAGTTAAGCATCCA
ATTTCTGAAAAGGAAAACTTAAGCAGCTATGTAAGCCATCAACAACAGAA
AGTTTATACAAATATGATTCTTAGAGTACGCCAGATTCCAGCCCCAATGA
GTAGAAGTTGTCAGGTTTGTCTCCCCACGAGGTTCTGGCTGTAGAGATAA
GAAGATACATACTCTGGGAAATTAGAATCTTCCTCTAAGATTACAGATAG
CTGTCTAGACCAGAAGTGTGTTGATGTAAAGTGAAGAACTATGTGAAGCC
ATTGATTGATTTCTAACCAAAGTTCCTCTTTTCTCTATATTATATATTCC
ACTACCTTACACTTATTACCTTTATCTTTTTTATCTATATACACTCACCA
AGACTCCTTTTTGTTATTTAATATTTATAATTTTGTACTACTCCCCCACA
CCACTACCTTTATTTCTTTGCTATCTTCTATTACTACTTCCTCCCACCAC
ACACACCTATCATTTCTTCATATTATGCTCATTATATTTG
CACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTGCCGTGCAGGCCTCCAAT
TGAATCTGAGTTATTAGTTACTCCCATATTAACCATTTCTCGTCTGTCCT
TTTAAGAAAACACATCAAGTCCAATATGTATTGCCCAACCATTCTTGGCA
GTGGAACTAGATGATCATAAAGTGTGATCCACCTAACAGAAGCCACATGA
TTGAAGAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCTCTCTCTCTCTCTCTCTCC
CTCAATATATTTTAAATTATATTCACACCCACAGAAAGTATTATATTCTC
CATAAAAAATTTGTGGGACCCCCCCCCCCCGATAAAATATTTTGTCCTGA
TATATATACACGTTTTTATTTTAGCTCCTCATTTGATCTATATTATATAT
ATAATTATCTCCCCTTACATTTGTTATGGCTTTTTCGTTCAGATCCCACT
ATTTTATTTTTTTCCATAATATGTATTTATTAGGACTAATTTATATTATA
TTAAATATAAAATAAATATTTCACCATATTTATTCTTTGTTATATTATAA
ATACCTTACAAAAATGTAATACAAACCTCACATTTCCCCCCCCAACTAAT
CTCATTTAACCACCTCTTCCCTCTTCTCTATCTTATATTTATATTTTTTC
TTTCCCTGCTCTTTTTTCTCCACCCACCCTTACCTTTCCCCTATATTTCA
TCCTCCACCTATCACACCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_h05.g1 MSMg01no166_h05.g1 CHROMAT_FILE:
MSMg01no166_h05.g1 PHD_FILE: MSMg01no166_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:57 2005
         (269 letters)



>mm_chr3_132165313_132165981
          Length = 669

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcctgccgtgcaggcctccaattgaatctgagttattagttactcccatattaaccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcctgccgtgcaggcctccaattgaatctgagttattagttactcccatattaaccat 260

                                                                       
Query: 61  ttctcgtctgtccttttaagaaaacacatcaagtccaatatgtattgcccaaccattctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctcgtctgtccttttaagaaaacacatcaagtccaatatgtattgcccaaccattctt 320

                                                                       
Query: 121 ggcagtggaactagatgatcataaagtgtgatccacctaacagaagccacatgattgaag 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcagtggaactagatggtcataaagtgtgatccacctaacagaagccacatgattgaag 380

                                                                       
Query: 181 aaatctctctctctctctctctctctctctctctctctctctctctctctctctctctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatctctctctctctctctctctctctctctctctctctctctctctctctctctctct 440

                  
Query: 241 ctctctc 247
           |||||||
Sbjct: 441 ctctctc 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)