Query= MSMg01no166_k06.b1 MSMg01no166_k06.b1 CHROMAT_FILE:
MSMg01no166_k06.b1 PHD_FILE: MSMg01no166_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:12 2005
(313 letters)
>mm_chr3_80405181_80405892
Length = 712
Score = 511 bits (264), Expect = e-149
Identities = 297/308 (96%), Gaps = 3/308 (0%)
Strand = Plus / Minus
Query: 5 gaattctattacccaacttgaagctgattaattcaattgcttttgtttgtgtaactggaa 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattctattatccaacttgaagctgattaattcaattgcttttgtttgtgtaactggaa 451
Query: 65 agtaattgcttgccaaacctttccaaatacaatcctttcatcttcttctctggggtgagt 124
||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct: 450 agtaattgcttgctaaacctttccaaatgcaatcctttcattttcttctctggggttagt 391
Query: 125 tataaacaagtgcattttctaatatttcagttgttcgctattaacttgtcagaagtttta 184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 390 tataaacaagtgcattttctaatatttcagttgtttgctattaacttgtcagaagtttta 331
Query: 185 aatccatccttccctacttagaggcaaatgtctccccatgatggattgaatgtcatacaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aatccatccttccctacttagaggcaaatgtctccccatgatggattgaatgtcatacaa 271
Query: 245 ggaggtactgctgaattcttgctacatcctattttttactgcaatttgtgtccct-caac 303
| |||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct: 270 gtaggtaccgctgaattcttgctacatcctattttt-actgcaatttgtgtcc-tgcaac 213
Query: 304 aaagaagt 311
||||||||
Sbjct: 212 aaagaagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 712
Length adjustment: 9
Effective length of query: 304
Effective length of database: 703
Effective search space: 213712
Effective search space used: 213712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_k06.g1 MSMg01no166_k06.g1 CHROMAT_FILE:
MSMg01no166_k06.g1 PHD_FILE: MSMg01no166_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:12 2005
(651 letters)
>mm_chr3_80234634_80235684
Length = 1051
Score = 1201 bits (621), Expect = 0.0
Identities = 649/673 (96%), Gaps = 23/673 (3%)
Strand = Plus / Plus
Query: 1 ccaaaatgaaagccagggcagttttagtttttattttttcatttttccttagtgtgatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ccaaaatgaaagccagggcagttttagtttttattttttcatttttccttagtgtgatct 237
Query: 61 tatgtttggcttttatatgaatttataagcttaatattcagatttgacattagttcttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tatgtttggcttttatatgaatttataagcttaatattcagatttgacattagttcttgt 297
Query: 121 atagaactttgtatagatattaatccttccatagttttagtcaaaactaaagacaactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atagaactttgtatagatattaatccttccatagttttagtcaaaactaaagacaactga 357
Query: 181 aagaaaattaacaacatatagtataaaagaaagtaagagagcttgagttgtcatcaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aagaaaattaacaacatatagtataaaagaaagtaagagagcttgagttgtcatcaagaa 417
Query: 241 acttaaagcagatataagtcccgctaactgcagaaatacctcttcccaagaagttagg-- 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 acttaaagcagatataagtcccgctaactgcagaaatacctcttcccaagaagttaggaa 477
Query: 299 ---------------------aaagagccaagagaaaacaacttttctaggggaaataat 337
|||||||||||||||||||| ||||||||||||||||||
Sbjct: 478 agagccaagaggaaaaaaaaaaaagagccaagagaaaacaatttttctaggggaaataat 537
Query: 338 gagtgagcctagaataaaaaagttactctttgaagaaccaattattcactgaggaagaac 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gagtgagcctagaataaaaaagttactctttgaagaaccaattattcactgaggaagaac 597
Query: 398 taagcaatattgttggaagatgttcccaaggtgcacctgctatttgcctctgaaagtaga 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 taagcaatattgttggaagatgttcccaaggtgcacctgctatttgcctctgaaagtaga 657
Query: 458 catttttcttctcatgtggttttgtatttagatagatgagatgatttgacttaaggaaag 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 catttttcttctcatgtggttttgtatttagatagatgagatgatttgacttaaggaaag 717
Query: 518 atatctgattagaatgtgagagagggtatagggaagttgtttattattctaccgcagtgt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 atatctgattagaatgtgagagagggtatagggaagttgtttattattctaccgcagtgt 777
Query: 578 tcacctgcatggcacgaagcatcaaaatacctgtgatgaacgggttacattataaacata 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tcacctgcatggcacgaagcatcaaaatacctgtgatgaacgggttacattataaacata 837
Query: 638 gactcaaagtgtt 650
|||||||||||||
Sbjct: 838 gactcaaagtgtt 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
