BAC Information

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BAC

Clone NameMSMg01-167C07
Chromosome3 (Build37)
Map Location 119,070,989 - 119,071,111
singlet/doubletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167C07.T7 (MSMg01no167_c07.b1)MSMg01-167C07.TJ (MSMg01no167_c07.g1)
ACCAG364743AG364744
length700746
length of high quality
(start - end)
549 (44 - 592)---
definitionCHROMAT_FILE: MSMg01no167_c07.b1 PHD_FILE: MSMg01no167_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:50 2005CHROMAT_FILE: MSMg01no167_c07.g1 PHD_FILE: MSMg01no167_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATTCAAAGAGGATCCGCGGAATTCTGTGCTTACCATACAGATATTTT
CAGTTTAAGTTCATCAGTGGCAGGCAAGTTAGGGTTCCTTGCCCCATTTT
CCTTTCATTTATGAGACTGGAGTAGGGTTTCCTTCACTCAATCTGGATCC
AGTTCAAGAAAATGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACTGTAAAATG
TGGTACATCTACAGAATGGAGTACTTCTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGCCACCCTCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTTCT
AAACACATGAAACTCAAGAAAAATGAATACTGAAGTGTGGACACTATGCC
CCTCCTTAGAAGTGGGTACAAAACACCCTTGGAAGGAGTTACATAGACAA
AGTTTGGAGCTGATATGAAAGGATGGACCATGTATAGACTGCCATATCCA
GGGATCCACTCCATAATCAGCATCCAAACGCTGACCCCATTGCATACACT

NTTTCTTTGTTTTNNCACCGGCCTACAACCCATGTAAANNTGATGAAGGG
GAGGCGGGGGGTGTTGTTTCCGACCGGGGNGNNNNNNNNGTACGAAAAAA
GNNGGGNNNNGNNNNNGNNNNGNNNNNGNNNNNNNNNNNTNNCCGCGNNG
NNNGGGNNNNNNNNNNNGNNNNNNGNNNNGNNNNGNGGGGGGGGGGGGGN
GGGGGGGGGGGNNGGGGGGNNGGGGGGGGGGGGGGGGGGGGNGGGNNNNN
GGGGGGGGGGGGGGGGGGGGTTTTTTTTTTGNGNGAGGGGGGTGGGGGTG
AGGGTGGGTTGTGGGGGGGTGTNNTGTGGGGGGGGTTTTGGATGGGTTTN
NAAAGGANNNNAAGGGAAGNAGGGGNNNATTAGGCCGCCCACCCCAAAAA
GGGAGGGGANACCAGGGAAACAAGGGANGGGGACAACCAAAGGAAAGAAA
AAAAAAGGAAGGGGAGGGGGGGGGGAAGGGACAGAGGGAGGGCGGGGGGA
GAGAAAGAGGAGGAGGGAGAGAGAAGGGAAAGNAGCGGGAAAGAAANCNA
AAAAGGGGGAAAGAGGGGGGGAGGAAAGGAAGAAAAAAGAGGGCCAGAAG
AGAAGGAGGCGAGANGAGAGAAAAAGGAAGGGGGAAGAGGGGGGGGAGGA
GAGAAAGACGCCCAAGAGAGAAGGAATGTTGTTGTTTATAAAGAAGGGAG
TAGGGAGACTTTCTGATTGAAGGGGAGGGTAGGGTTGGTGGAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_c07.b1 MSMg01no167_c07.b1 CHROMAT_FILE:
MSMg01no167_c07.b1 PHD_FILE: MSMg01no167_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:50 2005
         (549 letters)



>mm_chr3_119070793_119071741
          Length = 949

 Score =  207 bits (107), Expect = 2e-57
 Identities = 119/123 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattttcagtttaagttcatcagtggcaggcaagttagggttccttgccccattttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 319 atattttcagtttaagttcatcagtggcaggcaagttagggttccttggatcattttcct 260

                                                                       
Query: 61  ttcatttatgagactggagtagggtttccttcactcaatctggatccagttcaagaaaat 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 259 ttcatttatgagactggagtagggtttccttcacacaatctggatccagttcaagaaaat 200

              
Query: 121 ggg 123
           |||
Sbjct: 199 ggg 197


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)