BAC Information

Click to search

BAC

Clone NameMSMg01-167E05
Chromosome3 (Build37)
Map Location 18,506,481 - 18,506,824
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167E05.T7 (MSMg01no167_e05.b1)MSMg01-167E05.TJ (MSMg01no167_e05.g1)
ACCAG364809AG364810
length723699
length of high quality
(start - end)
344 (57 - 400)196 (350 - 545)
definitionCHROMAT_FILE: MSMg01no167_e05.b1 PHD_FILE: MSMg01no167_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:59 2005CHROMAT_FILE: MSMg01no167_e05.g1 PHD_FILE: MSMg01no167_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCAG
ATACCATTTCCATTTGTTGGTTCCAGGTGCAGAGGAAACAAGTAGGAAGG
ATCACAGTAATCCAATTATGGAGATCACAGAGAGTAGGAAGCTCAGAGGA
GGCCATGATATGCATGGTTCATCTTACCTAGACTTTTGGGTTTCAACAAA
CTAGATGGCAAGTCCCCAGGCTTCTGTCCATCTGGCCTACAGAGTTCTCT
AAAGTATCATTCAACTTACTTTTATTTGTATCTATGTGTCAGCAATGGCC
CCAGGGAAACATGTCTTTGGGTATTATATTGTGCAGTTTTCCATTTCAGT
CTTAACCTGGATCTTAGCCTAGTCGCTTGCCAGTACTTTAAAAGCTGTGA
TAGCCCCCATTGGCCATCCTACCAAAGGCAATCCCCATCAAAATCCCAAC
AAAATTCTTCAAAGATATGGAAAAAGCAATTCTCAAATTCATCTGGGAAA
GCAAAAACCCAGAATAGCATAAACAATTCCTAACAATAAAAGAACAGCTG
GGGAAATCACCATCCCTGCCCTCTAGCTTAAGTACAGAACAATAGTGATG
GTATTGTTACCGAGATAGACATGTTGATCATTGGAATAGAACTGAATACC
CAGTAATATAACTAACTCCTTTAGGACACTTTGATTTTTACATAGTATCC
TAATTATATACTATGTTATTAGT
GTCGGATGGCAAGNGGTGGGNNGAACNANAGAAGTAACGCGACGGGAGTG
GAAAGCAGCCAGAAAGAAACTGGGACCTTGAACAGCATGAAGAGCCCAAA
CAGCAACTGAAGCCTCAACCCAGNTCTCAGAAGTGATGAAGGACTCCATG
CTTCTCAGGAGGTAAAGATGATTGGAAAAACACTGTCATAGCAGAATACT
TTCAATTATGACTGTATGAGAATTCTTTTTTCTCATGGGTTTTAAATCTG
ACTGAAAGAACAGGCTGTTCCTAGAGAAGCAGAGAAGCTATTCAATAATC
TGACCACNAGAAGATACTCTGAANACTACTATTTTATACCCCCACCCACA
CAGCTATAGACACTGCAATCTACAGTGATGGCCTGCCTCCATATATCCTG
GTACAGTAGTAACAAAAAAGCTGCAGATATAACCAACCACTGCTCACTGC
TCAATTGGATTTAAGGCCCATGAGATGGAGCCCAGGTCTGACACTGCTTG
GGTAGTCAATAGTCTAAAACTAGATAGACACATTCCTACAGGAAAACCAA
ATGACATTACTCAGCTGAAGCAATGTAGCAGTAAAATGAGTTCTAATCGC
ATTTGGATATAGTCATAGACGAGCATCTTGTTTTTTTTTCTACTTCCTTC
AGCAGTAGATGGGATCGAAATATACAGACTCATATCTGGACCAATTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_e05.b1 MSMg01no167_e05.b1 CHROMAT_FILE:
MSMg01no167_e05.b1 PHD_FILE: MSMg01no167_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:59 2005
         (344 letters)



>mm_chr3_18506281_18507024
          Length = 744

 Score =  665 bits (344), Expect = 0.0
 Identities = 344/344 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccatttgttggttccaggtgcagaggaaacaagtaggaaggatcacagtaatccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tttccatttgttggttccaggtgcagaggaaacaagtaggaaggatcacagtaatccaat 485

                                                                       
Query: 61  tatggagatcacagagagtaggaagctcagaggaggccatgatatgcatggttcatctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tatggagatcacagagagtaggaagctcagaggaggccatgatatgcatggttcatctta 425

                                                                       
Query: 121 cctagacttttgggtttcaacaaactagatggcaagtccccaggcttctgtccatctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cctagacttttgggtttcaacaaactagatggcaagtccccaggcttctgtccatctggc 365

                                                                       
Query: 181 ctacagagttctctaaagtatcattcaacttacttttatttgtatctatgtgtcagcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctacagagttctctaaagtatcattcaacttacttttatttgtatctatgtgtcagcaat 305

                                                                       
Query: 241 ggccccagggaaacatgtctttgggtattatattgtgcagttttccatttcagtcttaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggccccagggaaacatgtctttgggtattatattgtgcagttttccatttcagtcttaac 245

                                                       
Query: 301 ctggatcttagcctagtcgcttgccagtactttaaaagctgtga 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctggatcttagcctagtcgcttgccagtactttaaaagctgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)