BAC Information

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BAC

Clone NameMSMg01-167E10
Chromosome3 (Build37)
Map Location 56,658,192 - 56,658,382
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040139
Downstream geneLOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167E10.T7 (MSMg01no167_e10.b1)MSMg01-167E10.TJ (MSMg01no167_e10.g1)
ACCAG364819
length731921
length of high quality
(start - end)
---188 (120 - 307)
definitionCHROMAT_FILE: MSMg01no167_e10.b1 PHD_FILE: MSMg01no167_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:00 2005CHROMAT_FILE: MSMg01no167_e10.g1 PHD_FILE: MSMg01no167_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GGCCCTTTCCTTCCCTCCCTCGTCCCCTCTTCTCCCTTTTACTTTTTTTT
CTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCTCGCGGAATTCCTTCACTGGTCACAACTTGTAGGAAGA
ACAGAAAGGCCCTGACACCACGGCAGTGGCTGTTTCAACATAAAAGTCTG
TAAATAGCCAGTGGGGCCACATAGCCAGGAGGCAACTTCCACATGAGGGC
CAAACTGAAACCTGACTGGGAGCCCAGAGACGGTGACACAGACAACGACA
GCCACTGGCGGAATTGCACTTGGAGGCTATACTAGCTTCAGGACCCAATG
GTTAAACAGGCGTCCGGTTTTTTTTATATTGGTCCCCCCTTAGAAAATTT
ACATTTATCAAAACCCTTTTGATTTCCCCTTTCTAATTTCCCCCCCCCAT
TCTTCTTCTTACAATTCTATTATTTTCCACTTCTCATTAACTCCCCAATT
ATCTCCCACCTCATATAATCATTATTTCATATCTTATACATAGTATAAAG
CCCCCACACCCCCTCCCCCTTAATATTCTTCTACTTTATACTCTACCTTA
CCTTTTTTCCACCTCTAACACCTTTTATTTTCCTTCTCCCTCTTTCTCCA
ATACCACCCCACTACCATACTATCCTAAATTACTCAATATTCCCTCACCT
TTGTTACCCCACCACATCTTCTTATTTTCCCTCTCCTCACATTTTATTCA
ACATCACCCCACTCCAATTATTCCTATCTTTTTATTATTCCCCTTACACA
CCCCTATTCTTTATTTTTAATTCCACTCCCCCCTACTCATTTTTTCTCCT
TCATCTCCAATTAACTCACAAAATTATTCTATTTTTCCTTTCTATTTTTC
CCGCATCCACCCACACTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_e10.g1 MSMg01no167_e10.g1 CHROMAT_FILE:
MSMg01no167_e10.g1 PHD_FILE: MSMg01no167_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:00 2005
         (188 letters)



>mm_chr3_56657992_56658582
          Length = 591

 Score =  323 bits (167), Expect = 4e-93
 Identities = 184/191 (96%), Gaps = 3/191 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccttcactggtcacaacttgtaggaagaacagaaaggccctgacaccacggcagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 attccttcactggtcacaacttgtaggaagaacagaaaggccctgacaccagggcagtgg 260

                                                                       
Query: 61  ctgtttcaacataaaagtctgtaaatagccagtggggccacatagccaggaggcaacttc 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtttcagcataaaagtctgtaaatagccagtggggccacatagccaggaggcaacttc 320

                                                                       
Query: 121 cacatgagggccaaactgaaacctgactgggagcccaga---gacggtgacacagacaac 177
           |||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||| 
Sbjct: 321 cacatgagggccaaactgaaacttgactgggagcccagaaacgacggtgacacagacaat 380

                      
Query: 178 gacagccactg 188
           |||||||||||
Sbjct: 381 gacagccactg 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 591
Length adjustment: 8
Effective length of query: 180
Effective length of database: 583
Effective search space:   104940
Effective search space used:   104940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)