BAC Information

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BAC

Clone NameMSMg01-167N15
Chromosome3 (Build37)
Map Location 18,090,748 - 18,091,018
singlet/doubletsinglet
Overlap geneCyp7b1
Upstream geneEG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5
Downstream geneLOC622921, LOC100040153, Armc1, Mtfr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167N15.T7 (MSMg01no167_n15.b1)MSMg01-167N15.TJ (MSMg01no167_n15.g1)
ACCAG365212AG365213
length816736
length of high quality
(start - end)
44 (74 - 117)336 (77 - 412)
definitionCHROMAT_FILE: MSMg01no167_n15.b1 PHD_FILE: MSMg01no167_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:43 2005CHROMAT_FILE: MSMg01no167_n15.g1 PHD_FILE: MSMg01no167_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTCAGNANGGATCCGCG
GAATTCTTGATCCTCCACTCCATTTATCATGAATGGGTATTGGATTTTGT
TAAATGCTTTCTCAGCATCCTCCGAGATGATCATGTGGTTTTTGTATTTG
AGGTTGTTTATATAGTGTATTAGTTTGCTGCCNNNCCCCCCTCCCCCTCC
CCNTCCCTTCCTCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCTTTCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCTCCCCCCCCCCCTCCCCCCCCCCCCCCCTCCCCNTCCCCCCCCCC
CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTCTCCC
CCCTCCCCCCCCCCTTTTTCCCCCCCCCCCCCCCCCCCCCTCCCCTCCCC
CCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCC
CCCCCCCCCCCCCCCCTCCCTNCCCCCCCCCCCCCCCCCCCCCTCCCCCC
CCCTCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCTCCCCCC
CCCCCCCCTCCCCCCCCCTCCCCTTTCTCCTCTCTCCCCTCCCCTTCCCC
TCCCCCCCCCCCCCCCCCCTCCTCCCCTCCCCCCCCCCCCCCCCCCCCCT
CTTTCCCCCCCCCCCTCCTCCTCCCCCCCCCCCCCCCCCCCCTCCCTCCC
CCCCCCCCNTCCCCCCCCCTATCCCCCTCCCCCCCCTCCCCCCCTCCCTC
TTCCTCGTCCCCTGCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCAACACAGAAGTTTAGTGGG
CATATACCCAAATAAACCTTCTAATACTATCTCTGATAATATTTGGGCAA
AAGAAATAATTTGTAAAACTTAGATGTTGATTGGAGACCAGTCTGTCTAT
CTTTGTTTGTTTTATGGTTACTACTTTGGTTTGCCTGGTGACTAGTGGCT
GGTTGGTTTTTCTTTTTGTAGTTGTTTGTTTGTTGTTTTACTTCATGATT
TACGCTGATCTTAGAAGTTGATATACTCGTGCCCCAATCTTCTGAGTGCT
AGGATTATAAGAGCACCACTAAATGTGGCTGGTTGGGATCTTTACTGTCC
TCCAAATATTGCGCCCCCCCCAATCCCCAGCTTGTAGAGCTCTTGGAAGC
TGGTGGGGTGTTTAGGAGGCGATTAATACTGTTGCTTTATACTCCCACTC
CTCTCTTTTTATGTCACACTATACCCGCCTCTCTCACACATTTTTTCTTT
CTTCTTCGCATCTTACCTATTTCTCCCCTTCTTTCACCTCCCTTTATTCA
TTATTTCTTATCATTATCTTTTTCCCTATATTACCCCCACCCCGTTTAAT
TCACCCTTTCTTTTATTATTTCTCTTACCCATTTTTTACTCTTTTTTTCT
TCTATAATCCCCCATTAATATAACCTGCATCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_n15.g1 MSMg01no167_n15.g1 CHROMAT_FILE:
MSMg01no167_n15.g1 PHD_FILE: MSMg01no167_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:44 2005
         (336 letters)



>mm_chr3_18090484_18091219
          Length = 736

 Score =  462 bits (239), Expect = e-134
 Identities = 263/271 (97%)
 Strand = Plus / Plus

                                                                       
Query: 65  atttgggcaaaagaaataatttgtaaaacttagatgttgattggagaccagtctgtctat 124
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttggccaaaagaaagaatttgtaaaacttagatgttgattggagaccagtctgtctat 324

                                                                       
Query: 125 ctttgtttgttttatggttactactttggtttgcctggtgactagtggctggttggtttt 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttctttgttttatggttactactttggtttgcctggtgactagtggctggttggtttt 384

                                                                       
Query: 185 tctttttgtagttgtttgtttgttgttttacttcatgatttacgctgatcttagaagttg 244
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 385 tctttttgtagttgtttgtttgttgttttacttcatgacttatgctgatcttagaagttg 444

                                                                       
Query: 245 atatactcgtgccccaatcttctgagtgctaggattataagagcaccactaaatgtggct 304
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 agatactcgtgccccaatcttctgagtgctaggattataagagcaccactaaatgtagct 504

                                          
Query: 305 ggttgggatctttactgtcctccaaatattg 335
           ||||||||||||||||||| |||||||||||
Sbjct: 505 ggttgggatctttactgtcttccaaatattg 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)