BAC Information

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BAC

Clone NameMSMg01-167O07
Chromosome3 (Build37)
Map Location 84,069,226 - 84,227,143
singlet/doubletdoublet
Overlap genenone
Upstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
Downstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167O07.T7 (MSMg01no167_o07.b1)MSMg01-167O07.TJ (MSMg01no167_o07.g1)
ACCAG365243AG365244
length732731
length of high quality
(start - end)		651 (45 - 695)575 (77 - 651)
definitionCHROMAT_FILE: MSMg01no167_o07.b1 PHD_FILE: MSMg01no167_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:46 2005CHROMAT_FILE: MSMg01no167_o07.g1 PHD_FILE: MSMg01no167_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,226,497 - 84,227,143)(84,069,226 - 84,069,797)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAAGAAAACTTTTAAGTGTAAAACTGGACTCTAGACCAGACCCAA
ATCCCTATACAATGTGACCCTGAGTTAAAGGTTAACGGCTATGCGTTTAG
CTATTATCTTCCCCCCTTTGCAAACAGCTAAACACCTTCTGTAAACAACA
CTTGCTTTCTGTATACTCCACAATTGCAGTTGTTTGCCCTTAAAAACACA
AACCAACGGGAGGTCGAGGCTGCTCTTCCAGCTTGGGACAATCACGTCAA
TGTTAAATAAAGACTCCATTTGATTTATTCAGGCCTCTTGGGAGTCTTTC
TCTTCAGGTACTCCATAACACATCCCTCCACCAGGAAAACGAAATCATAA
TCAAAAATTACATATGGAGCCTGGCTCCTAAGTCACTCAAGTGCCTTAGC
TGTAACATCTGCTCAGCCAGGCCAGGTGGGGTCTGCAGAGCGTGGCACAG
GACCTGTGGTGTCTTTTCCATATTACAGTGTCTGTGGGAATGGCGCCAGA
GCCAAGGTGCAGAGGAACTGAGGTCTCTTTTCAGTACTTCACGGATCAGG
ATTAGAGACATGGAGTGAGGATCAGCAGTCTTTGCCAGTCTAGCTTGAAT
TCAACATCTGCAGTGTGAGCCAGATTTCTCTGTCACACCTCAGACCAACA
TGAAGCAGGAACACGTGGGAAGTGAATTCACA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTTGTACATTGCTCAATGTGC
CTCATTAAGAAAGAAAAATTATGGTTGAAATGGTATGCAGGAAAGTCAGT
GTATGCTCCCTCCACCTACAGGATCAGTGCTGCCTGCTGCCTGCAGCATT
AACTCTGTACTCCACATGCACATTGATGCTCTCCCTTACTTACAGCATCA
ATGTTGTCCCCACCTGCAGCATCAATGCTGTCCTCCACCTGCAGCATCAA
TGCTGTCCTCCACCTGCAGCATCAATGCTGTCCTCACCTGCTGTATCAAT
GCTGTCCTCCACCTGCAGCATCAATGCTGTCCTCCACCTGCAGCATCAAT
GCTGTCCTCCGCCTGCAGCATCAATGCTGTCCTCCGCCTGCAGCATCAAT
GCTGTCCTCCGCCTGCAACATCAGCTGTCCTCCACCTGCAGCATCAGCTG
TCCTCCACCTATAGCATCAATGCTGTCCTCCACCTGCAGCATTTAGCTCT
GTACCCACATGTTCATTAATGCTCTCCTTTATCTACAGCATCAATGCTGT
CTGCCACCTACAGCATCAGTGTGTGTGTGTGACTGAAATGTGGGGGGGGG
GTAAATCTGNCGAGTTAATATAGTTTGCATCTTCCCATTTCTTTTTATCA
TCCATGGCTCTGGATTGTTTGTATTTTCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_o07.b1 MSMg01no167_o07.b1 CHROMAT_FILE:
MSMg01no167_o07.b1 PHD_FILE: MSMg01no167_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:46 2005
         (651 letters)



>mm_chr3_84226293_84227343
          Length = 1051

 Score = 1220 bits (631), Expect = 0.0
 Identities = 643/647 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaagaaaacttttaagtgtaaaactggactctagaccagacccaaatccctat 64
           ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 851 gaattccaaagaaaacttttaagtgtaaaactggactgtagaccagccccaaatccctat 792

                                                                       
Query: 65  acaatgtgaccctgagttaaaggttaacggctatgcgtttagctattatcttcccccctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 acaatgtgaccctgagttaaaggttaacggctatgcgtttagctattatcttcccccctt 732

                                                                       
Query: 125 tgcaaacagctaaacaccttctgtaaacaacacttgctttctgtatactccacaattgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tgcaaacagctaaacaccttctgtaaacaacacttgctttctgtatactccacaattgca 672

                                                                       
Query: 185 gttgtttgcccttaaaaacacaaaccaacgggaggtcgaggctgctcttccagcttggga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gttgtttgcccttaaaaacacaaaccaacgggaggtcgaggctgctcttccagcttggga 612

                                                                       
Query: 245 caatcacgtcaatgttaaataaagactccatttgatttattcaggcctcttgggagtctt 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caatcacatcaatgttaaataaagactccatttgatttattcaggcctcttgggagtctt 552

                                                                       
Query: 305 tctcttcaggtactccataacacatccctccaccaggaaaacgaaatcataatcaaaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tctcttcaggtactccataacacatccctccaccaggaaaacgaaatcataatcaaaaat 492

                                                                       
Query: 365 tacatatggagcctggctcctaagtcactcaagtgccttagctgtaacatctgctcagcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tacatatggagcctggctcctaagtcactcaagtgccttagctgtaacatctgctcagcc 432

                                                                       
Query: 425 aggccaggtggggtctgcagagcgtggcacaggacctgtggtgtcttttccatattacag 484
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 431 aggccaggtggggtctgcagagcgtggcacaggacctgcggtgtcttttccatattacag 372

                                                                       
Query: 485 tgtctgtgggaatggcgccagagccaaggtgcagaggaactgaggtctcttttcagtact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgtctgtgggaatggcgccagagccaaggtgcagaggaactgaggtctcttttcagtact 312

                                                                       
Query: 545 tcacggatcaggattagagacatggagtgaggatcagcagtctttgccagtctagcttga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcacggatcaggattagagacatggagtgaggatcagcagtctttgccagtctagcttga 252

                                                          
Query: 605 attcaacatctgcagtgtgagccagatttctctgtcacacctcagac 651
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 attcaacatctgcagtgtgagccagatttctctgtcacacctcagac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no167_o07.g1 MSMg01no167_o07.g1 CHROMAT_FILE:
MSMg01no167_o07.g1 PHD_FILE: MSMg01no167_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:46 2005
         (575 letters)



>mm_chr3_84069149_84070121
          Length = 973

 Score = 1067 bits (552), Expect = 0.0
 Identities = 567/572 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgttgtacattgctcaatgtgcctcattaagaaagaaaaattatggttgaaatggtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  actgttgtacattgctcaatgtgcctcattaagaaagaaaaattatggttgaaatggtat 137

                                                                       
Query: 61  gcaggaaagtcagtgtatgctccctccacctacaggatcagtgctgcctgctgcctgcag 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gcaggaaagtcactgtatgctccctccacctacaggatcagtgctgcctgctgcctgcag 197

                                                                       
Query: 121 cattaactctgtactccacatgcacattgatgctctcccttacttacagcatcaatgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 cattaactctgtactccacatgcacattgatgctctcccttacttacagcatcaatgttg 257

                                                                       
Query: 181 tccccacctgcagcatcaatgctgtcctccacctgcagcatcaatgctgtcctccacctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tccccacctgcagcatcaatgctgtcctccacctgcagcatcaatgctgtcctccacctg 317

                                                                       
Query: 241 cagcatcaatgctgtcctcacctgctgtatcaatgctgtcctccacctgcagcatcaatg 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cagcatcaatgctgtccccacctgctgtatcaatgctgtcctccacctgcagcatcaatg 377

                                                                       
Query: 301 ctgtcctccacctgcagcatcaatgctgtcctccgcctgcagcatcaatgctgtcctccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 378 ctgtcctccacctgcagcatcaatgctgtcctccgcctgcagcatcaatgctgtcctcca 437

                                                                       
Query: 361 cctgcagcatcaatgctgtcctccgcctgcaacatcagctgtcctccacctgcagcatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cctgcagcatcaatgctgtcctccgcctgcaacatcagctgtcctccacctgcagcatca 497

                                                                       
Query: 421 gctgtcctccacctatagcatcaatgctgtcctccacctgcagcatttagctctgtaccc 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 498 gctgtcctccacctatagcatcaatgctgtcctccatctgcagcatttagctctgtaccc 557

                                                                       
Query: 481 acatgttcattaatgctctcctttatctacagcatcaatgctgtctgccacctacagcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acatgttcattaatgctctcctttatctacagcatcaatgctgtctgccacctacagcat 617

                                           
Query: 541 cagtgtgtgtgtgtgactgaaatgtggggggg 572
           |||||||||||||||||||| |||||||||||
Sbjct: 618 cagtgtgtgtgtgtgactgagatgtggggggg 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 3
Length of query: 575
Length of database: 973
Length adjustment: 10
Effective length of query: 565
Effective length of database: 963
Effective search space:   544095
Effective search space used:   544095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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