Query= MSMg01no167_o14.b1 MSMg01no167_o14.b1 CHROMAT_FILE:
MSMg01no167_o14.b1 PHD_FILE: MSMg01no167_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:48 2005
(679 letters)
>mm_chr3_48824123_48825202
Length = 1080
Score = 1276 bits (660), Expect = 0.0
Identities = 672/676 (99%), Gaps = 1/676 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaatatcattcatgatgttgtgatatccagtagttatgtgtcttaacaataatg 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatatcaatgatgatgttgtgatatccagtagttatgtgtcttaacaataatg 264
Query: 65 aacaatgcagctaaaagcacaagaacacagttgtcatttcggcattctttgaataaaagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacaatgcagctaaaagcacaagaacacagttgtcatttcggcattctttgaataaaagc 324
Query: 125 ctcagtttcaccactgagttagctgtgagattatcacttggtggatttttgtacatttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcagtttcaccactgagttagctgtgagattatcacttggtggatttttgtacatttct 384
Query: 185 ttctgaagcatgaaacagttgttactagagatacagaaaaaaaataaatcttacagactt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctgaagcatgaaacagttgttactagagatacagaaaaaaaataaatcttacagactt 444
Query: 245 ttaaggtatactaagcattcttctttcacttgactaaattcaaactttactcttcttcac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaaggtatactaagcattcttctttcacttgactaaattcaaactttactcttcttcac 504
Query: 305 tttgtgcaacttggttatccatataatagcatgccaaaacattttgaatattttattaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttgtgcaacttggttatccatataatagcatgccaaaacattttgaatattttattaaa 564
Query: 365 tcctaattgcatatgattgcatatgcatgtttattacataattgcagaccataagataaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcctaattgcatatgattgcatatgcatgtttattacataattgcagaccataagataaa 624
Query: 425 aatctcactgaataaataacagtaggcaattatgccaaataatttagttatgatgacaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatctcactgaataaataacagtaggcaattatgccaaataatttagttatgatgacaat 684
Query: 485 ctaaaagtaatagaatattttaatatttacttacaagatatttcctaattgcatcttttt 544
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 685 ctaaaagtaatagaatattttaatatttacttacaagaaatttcctaattgcatcttttt 744
Query: 545 ttgcaaaaaaaaaaaa-tccaagttaatgattttgtaaatgaaatactactgtaagaaag 603
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgcaaaaaaaaaaaaatccaagttaatgattttgtaaatgaaatactactgtaagaaag 804
Query: 604 caaaggaaaatacttccttcatatgagtgtcctcaccgtaacaaagtactaatgcctccc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caaaggaaaatacttccttcatatgagtgtcctcaccgtaacaaagtactaatgcctccc 864
Query: 664 atttcctatactctat 679
||||||||||||||||
Sbjct: 865 atttcctatactctat 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1080
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1070
Effective search space: 715830
Effective search space used: 715830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_o14.g1 MSMg01no167_o14.g1 CHROMAT_FILE:
MSMg01no167_o14.g1 PHD_FILE: MSMg01no167_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:48 2005
(652 letters)
>mm_chr3_48977688_48978739
Length = 1052
Score = 1261 bits (652), Expect = 0.0
Identities = 652/652 (100%)
Strand = Plus / Minus
Query: 1 tccagtgagcaaacgagtgagtctctatttcttgtgatttcttttggcttctttccttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 tccagtgagcaaacgagtgagtctctatttcttgtgatttcttttggcttctttccttct 935
Query: 61 gtttgtttcttttgtccaattccaatgggttagtttttattttatcaacctatattctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 gtttgtttcttttgtccaattccaatgggttagtttttattttatcaacctatattctac 875
Query: 121 ttaatttattattatctttaggatcctgcttgttctctaatgagagaatggggatgcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 ttaatttattattatctttaggatcctgcttgttctctaatgagagaatggggatgcaaa 815
Query: 181 gagaaagcaggaggagtagagaagggaggccataagcagaatatattatatgagaaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gagaaagcaggaggagtagagaagggaggccataagcagaatatattatatgagaaaata 755
Query: 241 gttatttttaataaaatgaaaataaaataagaagaaaacagaattcaagaaatttatctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gttatttttaataaaatgaaaataaaataagaagaaaacagaattcaagaaatttatctg 695
Query: 301 aaaccagttaaatagtgaaattaccattggagtacagcaaatactttgaaaaaaaattac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aaaccagttaaatagtgaaattaccattggagtacagcaaatactttgaaaaaaaattac 635
Query: 361 tgtcaagttgagaagtgtattttggaactcttaagtttatgtatgtattcacaggtacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgtcaagttgagaagtgtattttggaactcttaagtttatgtatgtattcacaggtacat 575
Query: 421 aggtatacataagtgtataaacacatacaggcacatacaaagagaaagagagagacaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aggtatacataagtgtataaacacatacaggcacatacaaagagaaagagagagacaggt 515
Query: 481 agataaaattaactgcacttaacaatgcctgtccttaatcctagttttaaatctgtacta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agataaaattaactgcacttaacaatgcctgtccttaatcctagttttaaatctgtacta 455
Query: 541 aaataatagaattttaatatttatttttaacattccttttatttttgagatcataatata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaataatagaattttaatatttatttttaacattccttttatttttgagatcataatata 395
Query: 601 ataaaatgatttcttccttttcctccttcccaactcctcctttctctctttc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ataaaatgatttcttccttttcctccttcccaactcctcctttctctctttc 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
