Query= MSMg01no168_d14.b1 MSMg01no168_d14.b1 CHROMAT_FILE:
MSMg01no168_d14.b1 PHD_FILE: MSMg01no168_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:17 2005
(272 letters)
>mm_chr3_80471461_80472134
Length = 674
Score = 464 bits (240), Expect = e-135
Identities = 261/268 (97%), Gaps = 2/268 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatctctgatgagggcttcctcagtcttacagaagtgtagaaaacttccataag 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatctctggtgagggcttcctcagtcttacagaagtgtagaaaacttccataag 263
Query: 64 gaagacatggggccaacgaaggttagacttcacttgatccaagacagggatgtgaacctg 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaagagatggggccaacgaaggttagacttcacttgatccaagacagggatgtgaacctg 323
Query: 124 tcagtaatggctaaaatacaggagtctagatctcttgttaatgcctttggaaaaaa-tat 182
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 324 tcagtaatggctaaaatacaggagtctagatctcttgttaatgcctttagaaaaaaatat 383
Query: 183 gaaatgagtgttgtactaggaattcaattatgattttttta-aaaaagccttttagttca 241
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 384 gaaatgagtgttgtactaggaattcaattatgatttttttttaaaaagcctttcagttca 443
Query: 242 tacaggagttaagaatttccatgagatg 269
||||||||||||||||||||||||||||
Sbjct: 444 tacaggagttaagaatttccatgagatg 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 674
Length adjustment: 9
Effective length of query: 263
Effective length of database: 665
Effective search space: 174895
Effective search space used: 174895
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no168_d14.g1 MSMg01no168_d14.g1 CHROMAT_FILE:
MSMg01no168_d14.g1 PHD_FILE: MSMg01no168_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:18 2005
(282 letters)
>mm_chr3_80576139_80576819
Length = 681
Score = 501 bits (259), Expect = e-146
Identities = 276/285 (96%), Gaps = 7/285 (2%)
Strand = Plus / Minus
Query: 1 tttgtatgaaaattcaaagggctgaaagcagtgacgatcaaagttgatatggtttaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttgtatgaaaattcaaagggctgaaagcagtgacgatcaaagttgatatggtttaagac 422
Query: 61 aagaacaaacaagaactctcttaccaaattttatgaaactgtaatgagaacttatgtctc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aagaacaaacaagaactttcttaccaaattttatgaaactgtaatgagaacttatgtctc 362
Query: 121 aaaagtaattggcttagtgcaaagcaagagcaaagttgattcaaataatctgttttgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaagtaattggcttagtgcaaagcaagagcaaagttgattcaaataatctgttttgatt 302
Query: 181 taataagatattaaccaaccaggtaagacaaatgagtatacaaatcaccatagtttgtga 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taataagatattaaccaaacaggtaagacaaatgagtatacaaatcaccatagtttgtga 242
Query: 241 at---atttttgttaatacatattgttcaggttatactagatgat 282
|| | |||||||||||||||||||||||||||||||||||
Sbjct: 241 atacaa----tgttaatacatattgttcaggttatactagatgat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 681
Length adjustment: 9
Effective length of query: 273
Effective length of database: 672
Effective search space: 183456
Effective search space used: 183456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
