BAC Information

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BAC

Clone NameMSMg01-168I02
Chromosome3 (Build37)
Map Location 114,635,635 - 114,636,012
singlet/doubletsinglet
Overlap geneOlfm3
Upstream geneCol11a1, LOC100043220
Downstream geneEG546808, Edg1, Dph5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168I02.T7 (MSMg01no168_i02.b1)MSMg01-168I02.TJ (MSMg01no168_i02.g1)
ACCAG365667AG365668
length1,2731,120
length of high quality
(start - end)
---410 (71 - 480)
definitionCHROMAT_FILE: MSMg01no168_i02.b1 PHD_FILE: MSMg01no168_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:46 2005CHROMAT_FILE: MSMg01no168_i02.g1 PHD_FILE: MSMg01no168_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCACTTGGCGCCTACACACTCCTAAGGGAGAGGACCCGCGAAACTCC
TCACTACATTCTTTTGACTGCTACCGAAGTTTATATAACACCGCATTTGC
CACGAAATTATTACTGTGTCTAAACCAATTGCTAAGAGTCTTGGTGATTT
CCTTATCCGAAAGTAATATTACTAGCCACTTCTTTAATACTTCCTGATCA
TTTGACACATCCTGGAGTTGAATCACCACCACTTTCAACTTGTCATTTAT
TTCCAATCTCATTTGCTTCAGATCGCTTACCACGTTCCAATCAGTATCCT
ATGCACCCACGCTACATTTCTCTCTCTTTCAGCGCTCCTTTCTAACTCTC
TGACGAATTCCTGACTCTGCCTCTACCCCGCTCACTTAGTCTTTTTTTTT
TAACAGGCCAGTACAAACAACTACGATAGAGATAATGAAAGGTTTTTTTT
TTTTTCCCCCCCCCCAAAAGANNACCTCCCCCCCAAAAAAAAAAGGGGGG
TNTTTNNNNTNTNNNTTTTCTTTTTTCCCTCTTTTCTCCCTCTTTTCTGC
CCTTTTCTTCTTCTNCTCCCGCCCCCCTTTCTTTTCTTCCTCTCTTTTCT
TCCCCTCCTTTTTCTTTTTTTTTTTTTTTCCTCCCCTTTCTTCTTTTTTT
TTTTCTCCTTCTTTCTCCCCCCTCTCTTTCTTCTCTTCCTTTCTTCCCTT
CTTTCTTCTCTCCCCTTTCCTCTTTTCTCCTTCTTCCTTTTNCTCCTCCT
TTTCTTCTCCTTTNTCNCTCTCCTTTTTTCCTTTTTCCCCCTTTTTTCTC
CTTCTTTTCTTTCTTCCCTTTTTTTTTTTTTTTTCTTTTCTCTTTCTCTC
CCTCTTTTTTTTCTTTTTTTTCCTTCTTTTCCCCTCCTTTTTTTTCCCTC
TCTCTCTTTTCTCTTTTTTTTTCTTTTTTTTTTCTTTTTTCTTTTTCCCT
TCCCTTCTCTTTCTTCCCTTTTCTTTCTCCTTCTCTTTTTCTCTCCTTTC
TTTTTTTCTTTTTTCTTCCTTCCTTCTTCTTTCTCTCTTCTCTCTTACTC
TCTTTTTTTTCTTTACATTATAATTCTTCTTTATTCTCTTCTTTTTCTTC
TTTCTCTTTATATTTTTCTCTTTATTCTTCTATTCATTTCTTATTCTCTT
ATCCTCTTCCTACTTAATTTATTCTCTCTTATTTCTTTCCTTCTATTATC
TTTCATTTATTTCCTTTCTTTTATCTTTACTCTTCCTACTTCTTTCTATC
TTTTTCTCTTTCACTTTTCTCTG
NNCCTATGTATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATCTGAAAATTAAAGATGTGCATTCAGTC
ATCTTAAAATATTTCTGCACTAGTTCCCTAAAGTCTCATCCAAAGAATTA
CCAAAGGAAGATAACAGGTATTTCAGCCAGATAAAATAATCCACCTCAGA
ATGTTATTGATCACACAGCAGGAGGGTCTCAACTTTGACAATACAATCAA
TGCATTTAAGATTTAGACACTGAAATATGTGAAGAGTAGGAAAGCCAGCA
GTATTTTCATAAAGAAATGTTGTCTTCACTGTGGCAGAGGATTCAACATG
AAGTCACCCTTAAATAACCTTCTAGAAATAACAGGAGGCTGCTTTCTTTT
GAGATGGAAACAATTTGCCCACGAAACAGCAGGTGCCGCATTGTCATTTT
TTTTTCCCCCCCCCCAGAAAACAGTACCATTACATGAAAAAAGAAGGGAA
ACAAATTTCACACTGAATTTTCAAAAGAACTTGTTATGGGCCTGCAGGAT
GACTCACTGGGTAAAAGTGTTTGTCATTTTTGGATCTTACAATGTTAGTT
GAATTCTTGGAACCACACTATAGAAGGAAAGATTCTTCAAGTAGTTGCCC
TCTGATGTCCAGAGGCACCCAATGAAACACACACACACAAACACACACAC
AAATAAATAGATAGATGATAGATACATAGATAGATTAATAGATAGATAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGAGAGTTTCCTTCTTT
CTCTTTTCTTTTTTTCATTTTTCTTTCTATTTTCTCTTCCCTTTATAACT
TTTCTTTTTTTTTTATTTTTATTTTATCTTCTTTACTTATTTTTCTTCCT
TCTTTTCTTCCATATTTTTTCTCTCCTCTTTTTTTATTTTTCTTACTATT
CCTTTTCCTTTTTTTATTTTTACTTTTTTCATTTCATATTTTTCTTTTTT
ATTAATTCTTTTATATTTATCTTTTTCTCTTTACTCTCTTTTTTTTTTTT
TTTTTTTTTTCATATTTTCTTTATTTCTTTTTTTTTTTCTTTCCTTTTTT
TTTCATTTTATCTTTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_i02.g1 MSMg01no168_i02.g1 CHROMAT_FILE:
MSMg01no168_i02.g1 PHD_FILE: MSMg01no168_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:46 2005
         (410 letters)



>mm_chr3_114635435_114636244
          Length = 810

 Score =  700 bits (362), Expect = 0.0
 Identities = 374/378 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctgaaaattaaagatgtgcattcagtcatcttaaaatatttctgcactagttcccta 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctgaaaattaaagatgtggattcagtcatcttaaaatatttctgcactagttcccta 260

                                                                       
Query: 61  aagtctcatccaaagaattaccaaaggaagataacaggtatttcagccagataaaataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtctcatccaaagaattaccaaaggaagataacaggtatttcagccagataaaataat 320

                                                                       
Query: 121 ccacctcagaatgttattgatcacacagcaggagggtctcaactttgacaatacaatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacctcagaatgttattgatcacacagcaggagggtctcaactttgacaatacaatcaa 380

                                                                       
Query: 181 tgcatttaagatttagacactgaaatatgtgaagagtaggaaagccagcagtattttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatttaagatttagacactgaaatatgtgaagagtaggaaagccagcagtattttcat 440

                                                                       
Query: 241 aaagaaatgttgtcttcactgtggcagaggattcaacatgaagtcacccttaaataacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaaatgttgtcttcactgtggcagaggattcaacatgaagtcacccttaaataacct 500

                                                                       
Query: 301 tctagaaataacaggaggctgctttcttttgagatggaaacaatttgcccacgaaacagc 360
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 501 tctagaaataacaggaggctgctttccactgagatggaaacaatttgcccacgaaacagc 560

                             
Query: 361 aggtgccgcattgtcatt 378
           ||||||||||||||||||
Sbjct: 561 aggtgccgcattgtcatt 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)