BAC Information

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BAC

Clone NameMSMg01-168I10
Chromosome3 (Build37)
Map Location 129,033,623 - 129,181,890
singlet/doubletdoublet
Overlap geneEnpep, LOC100043415, LOC435755, LOC668840
Upstream geneLOC100043393, EG668831, Pitx2
Downstream geneElovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168I10.T7 (MSMg01no168_i10.b1)MSMg01-168I10.TJ (MSMg01no168_i10.g1)
ACCAG365681AG365682
length1,2261,192
length of high quality
(start - end)
351 (42 - 392)321 (72 - 392)
definitionCHROMAT_FILE: MSMg01no168_i10.b1 PHD_FILE: MSMg01no168_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:49 2005CHROMAT_FILE: MSMg01no168_i10.g1 PHD_FILE: MSMg01no168_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,181,564 - 129,181,890)(129,033,623 - 129,033,943)
sequence
NNGTGCTTTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTGGTAATAATCTTACAATTTCCTGATTGTTCCATGATCCAGCAGACT
AATTTGCTATGTATTAAAATGTATATCCCATAGCAAGCTAGTTACCGTGG
CATGCCTTTAATCCCAGGTCTTGGGAGGCAAAGGTAGGTGGATCTCTATG
AGTTTGGAACCAACCTGTTTTACTTGAGTTCCAGGCCAGTTAGGGCTACA
TAGTGAGATCTTATCCACAGAATAGGTTCAAATCTGGCCTCAGCTGGCCT
TGGCTTTGAACCAAGAAACTTTAGAATGAAAAGGAACCCTCATATATCAC
ATATGTCATGATGAAAGCTACCTGAAGTATCATTACTAGTAATTTTTTTC
CTTTATGAGAAACTGCTCTTCTTGTGTAATACTGCAATATGGTTTTTTTT
TTTCCCCCCCCCCCCCACCTTAGCCCGATTTTTAAAAAAAAAAGGAGGTG
ATCNGTTTAGGTAAGACTGGCTTTGGACCTTGTAATCAATATGGAATTGT
ATCTGTTTTGACCGAATGCAGAACCATCCTGCTATCCACCAATGAAAGGT
AGGTGGGAGACCATCGTAAGCATTATCATGACCTAATACTGAAGTTTAAA
TCCAGACTGTTGGGTGTTTAAAGCACTTGTCAGATGTTATGTGTAATATT
GTTTATTCCTTATTCTATGTCATTCTGTTTGATTCAACTTTATGAATACT
TTCTCTATTTTCTTTTTTTTTTTTTTTGTAATTTTGACATTTTTTCGTGT
TTTTTTCTTTACTACTTTTTTCTATTTTTTTTTACTTCTCTTTTCTTGTT
ATTTTCTTTGTATTTACTTTTACTTTTTTTTTATCTCTATCTTTATCTTT
TTTTTTTCTTTTTATACTTATTTCTTTTTTATTTCTTCTTTATCTTTCTT
TCTTTTTTTCTTTATTTCTTTTATTTTTTCCTTTTTTTTTTTTTCTATTC
TATTTTTTCTTTTTATATTTTTCCTTTTATTCTATTCTTTATTTTTTTTC
TATATTTTCTGTTTTTTTTATCTACTATTTTTTTTGTTATTTTTTTTACT
TTTTCTTTTTCATTTTATGCTTTCTCTACATCCTGTCTTTTTATATCTTT
CTCCTTCACCTTCTTTTCCTTCTTCATTTTCTTATTCTCCTTCTTATTTC
CTACATTTCTTTATTTCTCTACTATA
NNNTTTCGACTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGAAGGAGCTTACACCGTTTACCAAGA
ACTGATAAAAGCCACTGGGTCACGCGAATATCAGATAGAAAGTAATAGAT
TAGGTAGAATATATTAGTTTTATAATTATAATTATTTAATGTATATTTTA
AACACTTCTGCTTGGGACACTGCAGGGAAGAAAAACACTTGTGGCTGCCT
GTTATGTGGTAAAGGCTTGGTTAGCATTACTACTGCCTGCTTAGTGATAG
TTGGCAGCTCCAAGGTTTATCCATATGCCATCACTGATCCAGGTTTTAAG
CATTCCCCGAAAGCCTAGTTAGAAACATAGTTCTGATCACAGATTTTTTT
TAAACACAGCCAGGCTTTTCTTCTTAGATGAACACCTAAGGATTTTTTTT
TTTTCCCCCCCCCCCCGAAANGANTCTTCTCCAAAAAAAAGAGGGATGTT
NCTNTTGNCNCTTNNTGGTCTTGTCCTTGCCCCTGCTCTTGTCCTCCCTT
GTGCCTTCCCTGTGTTTTCGCCCCCTTTCCCCCGTGGTGTCCTTTCTCCN
CTTCTTCTTTTCTTTTTCCTCCTGAAGCTCTTTGTGTGCTTGTGTTCTGT
CTCGTTGCCTTGTGTTTTTTCCCGTTGCTCTTCCTTCCCTCTCCTCTTTC
GTCTCTGTTTTCTCCTTTTTTTCTCTTCTCCTGCTTTCTTTTCTTCTTGC
CTGTGTCTTCTCCTTTTTTTTTTCTCTTCTCTTCTCTTCCTCTTTCCCCG
TTCTCTCCCTTTCCTTCTCTTGCTCTCTCTCCTTCCCTCTCTTCTTCTTT
TTCTTCTCTTCCCCTCTTTCTTTTTCTTTTTTCTTTTTCTTTCCTTCTTC
CTTCTCCTTTTCTTTCTTGTTCCCTTCTCTTTCTCCCTCCTTCTCTTTTC
TTTTCTCCTCTTTTTCCTTTTTCCTCTTCTTTTCTCTTTCTTTTCTTCTT
CTCCTTTCTCTTTTTTCTCTTTTCTTTCTTTTTCCTTTCTTTTCCCGTCC
TTCCTCTTCTTCGCCTCTTCTTTCTTTTTCTCTTCTTTCTCGCTTTCTTT
TTTTTTTCTCCTTTCCTCGTCTTCCCTTCTTCTTTNTTCTTCTTTTCTTT
CCTCTCTCCTCTTCTCGCCTCTTCTTTTTGCCTCCCTCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_i10.b1 MSMg01no168_i10.b1 CHROMAT_FILE:
MSMg01no168_i10.b1 PHD_FILE: MSMg01no168_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:49 2005
         (351 letters)



>mm_chr3_129181140_129181890
          Length = 751

 Score =  617 bits (319), Expect = 0.0
 Identities = 325/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 25  tacaatttcctgattgttccatgatccagcagactaatttgctatgtattaaaatgtata 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tacaatttcctgattgttccatgatccagcagactaatttgctatgtattaaaatgtata 692

                                                                       
Query: 85  tcccatagcaagctagttaccgtggcatgcctttaatcccaggtcttgggaggcaaaggt 144
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttccatagcaagctagttaccgtggcatgcctttaatcccaggtcttgggaggcaaaggt 632

                                                                       
Query: 145 aggtggatctctatgagtttggaaccaacctgttttacttgagttccaggccagttaggg 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aggtggatctctatgagtttggaaccaacctgttttacttgagttccaggccagttaggg 572

                                                                       
Query: 205 ctacatagtgagatcttatccacagaataggttcaaatctggcctcagctggccttggct 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ctacatagtgagatcttatccacagaataggttcaaatctggcctcagctggccttggct 512

                                                                       
Query: 265 ttgaaccaagaaactttagaatgaaaaggaaccctcatatatcacatatgtcatgatgaa 324
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 511 ttgaaccaagaaactttagaatgaaaaggagccctcatatatcacatatgtcatgatgaa 452

                                      
Query: 325 agctacctgaagtatcattactagtaa 351
           |||||||||||||||||||||||||||
Sbjct: 451 agctacctgaagtatcattactagtaa 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no168_i10.g1 MSMg01no168_i10.g1 CHROMAT_FILE:
MSMg01no168_i10.g1 PHD_FILE: MSMg01no168_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:49 2005
         (321 letters)



>mm_chr3_129033423_129034143
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 318/321 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaaggagcttacaccgtttaccaagaactgataaaagccactgggtcacgcgaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aaggaaggagcttacaccgtttaccaagaactgataaaagccactgggtcacgtgaatat 260

                                                                       
Query: 61  cagatagaaagtaatagattaggtagaatatattagttttataattataattatttaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatagaaagtaatagattaggtagaatatattagttttataattataattatttaatg 320

                                                                       
Query: 121 tatattttaaacacttctgcttgggacactgcagggaagaaaaacacttgtggctgcctg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tatattttaaacacttctgcttgggacactgcagggaagaaaaatacttgtggctgcctg 380

                                                                       
Query: 181 ttatgtggtaaaggcttggttagcattactactgcctgcttagtgatagttggcagctcc 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ttatgtggtaaaggcttggttagcattactattgcctgcttagtgatagttggcagctcc 440

                                                                       
Query: 241 aaggtttatccatatgccatcactgatccaggttttaagcattccccgaaagcctagtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtttatccatatgccatcactgatccaggttttaagcattccccgaaagcctagtta 500

                                
Query: 301 gaaacatagttctgatcacag 321
           |||||||||||||||||||||
Sbjct: 501 gaaacatagttctgatcacag 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)