BAC Information

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BAC

Clone NameMSMg01-168J19
Chromosome3 (Build37)
Map Location 52,758,088 - 52,758,355
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
Downstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168J19.T7 (MSMg01no168_j19.b1)MSMg01-168J19.TJ (MSMg01no168_j19.g1)
ACCAG365738AG365739
length699886
length of high quality
(start - end)
271 (45 - 315)---
definitionCHROMAT_FILE: MSMg01no168_j19.b1 PHD_FILE: MSMg01no168_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:58 2005CHROMAT_FILE: MSMg01no168_j19.g1 PHD_FILE: MSMg01no168_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGTGTTGGGGAGGGAACTGGAGAGAAGGTGCATTTATATGGACT
CTTCTCAAAGTGCCACGCCCAGCATTTTCTCCCACCGCAGCGGCTCTTCT
AAAGACCATACAGATTGAAAATCCTACTGCTCCTTCTATCTTTACCTGGT
CCCTTCAGATGGTCCTGGGTAAAACTTTATTTCAGCTCTCACTGTGAATA
CTCAGGATTGTGAACCCTTCAAAGCAGAAAATTCCACCATCAGGAAAATT
ATATTTGATGTTTGCTCTGTTTGGACCACCCTGTGGCTGCCACTGCCTCT
GCTGTTTGNCTCANCTTAAAAACATNGGCCCTTTGTATTATTTGTGNTTN
TGGAGNCATTCCNAACAAAGGNGGAGGTGAAGACGATGGCGGGGGGGGGT
CCGCTCATAATCTTGCTTTCATCTCCAGCGTGGTCAGACGGCCTTGCCAT
CTGCCTTATCCACTGCTCTCCCTTCGATACCCTCTCTGTGCCCTCCCCTC
CCAACGAACTTCTCATTACCTCTGCCCCTTTTTCCTCCAATTTATATCGC
ACACTCTCTTACACCACTAATTATCATAGCACCTCAACATATACACCTTT
GCTTTCCCCTATTCTCTCTTTTTAATCTTACTTCTCCCTCTCACCGATA
NAAGCAGGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATNNTCGAGGGGGTGGGGG
GTGGGGGATGTNCNNNNNGGNNNNNNNNNNNNTNTTGTTGTTCCCTCTGG
TTTTGGGAGGGGGGGGTGCGTTCCGCAGANTGGATAGTGCCAGTATATAT
TTATGCTCAAAAGCAAACAGACTAAGAGATATGAAAGAACTTGTCACGGC
ACGGGACAAGAGAGAGGGGTGGAGTGTAACGAAAGGGGAGATAAGATTTT
TTTTCGAAGCAGAGGGCAACAGAATGTATCAAGAGTGAAGAGATGCCACA
TGTGCGAAGACGGGAGCCACCAGTTTTTTTTTTTTTGTGAGAGNGCGGCG
GGGAGGAAAAAAAAAAAAATTANAAGGGTGGGNCACCTAGAAGGACAGGA
GAACACCTTTTTTTTTTTTTTTTTTGTTNTTNNTTNNTNNTGGGGGGGNN
AAAAAAANNNNTATNTNTTTTAATTAGGGGGGGGTTGTTGGTGGGGGTNN
NTNNTTTTTTTNNTNTTTNATATTANNTGTGGTTTTTTGGGTGGGTGGAT
TGGGNGGAAGTTGTTGGTGGGGGGGTGGGTGTGTGTGGGGGGGGGTTGTA
TAGTTGGATGTGTAAATTATGAGTGGAGGAGTAGGGGAGCGGGATTATAT
ATAATAAATAAGGAGGGGTTGGGGGTATATAAAATAATGTGAATTTAATA
TTATTATNGATTGGAGGAGAGGGAAAGAAATATGAATTAAATAAGAAGAA
GAAGGTGTATTTTAAAGTAATTTATATANAATGGTGGGAATAAAGAATAA
GAGGGGTATAAGGTTGTTTAGTAATAGAGAGAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_j19.b1 MSMg01no168_j19.b1 CHROMAT_FILE:
MSMg01no168_j19.b1 PHD_FILE: MSMg01no168_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:58 2005
         (271 letters)



>mm_chr3_52757885_52758555
          Length = 671

 Score =  487 bits (252), Expect = e-142
 Identities = 264/268 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttgtgttggggagggaactggagagaaggtgcatttatatggactcttctca 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 471 ggaattccttgtgttggggagggaactggagagaaggtgcatttatgtggactcttctca 412

                                                                       
Query: 64  aagtgccacgcccagcattttctcccaccgcagcggctcttctaaagaccatacagattg 123
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 411 aagtgccacgcccagcgttttctcccaccgcagtggctcttctaaagaccatacagattg 352

                                                                       
Query: 124 aaaatcctactgctccttctatctttacctggtcccttcagatggtcctgggtaaaactt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaaatcctactgctccttctatctttacctggtcccttcagatggtcctgggtaaaactt 292

                                                                       
Query: 184 tatttcagctctcactgtgaatactcaggattgtgaacccttcaaagcagaaaattccac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 291 tatttcagctctcactgtgaatactcaggattgtgaacccttcaaagcagaaaatcccac 232

                                       
Query: 244 catcaggaaaattatatttgatgtttgc 271
           ||||||||||||||||||||||||||||
Sbjct: 231 catcaggaaaattatatttgatgtttgc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)