BAC Information

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BAC

Clone NameMSMg01-168L20
Chromosome3 (Build37)
Map Location 88,457,392 - 88,457,673
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4
Downstream gene2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168L20.T7 (MSMg01no168_l20.b1)MSMg01-168L20.TJ (MSMg01no168_l20.g1)
ACCAG365826AG365827
length840723
length of high quality
(start - end)
---282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no168_l20.b1 PHD_FILE: MSMg01no168_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:10 2005CHROMAT_FILE: MSMg01no168_l20.g1 PHD_FILE: MSMg01no168_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
TTTCCAAGGCTATACTGAGAAATTCTGTCTCGAAAAACCCATATATTGAT
TTATAGATAGAGAGAGAGACACAGAGAGAGAGAGAGAGAGAGAGATATAG
AGAGAGTAGAGTTTATTCCCCTTTTTCTCATCTTTTCCCTTTTTCTTCCT
CCCTTTCTCCCTTTTTTCCCCTCTTCTTTCCTCTTCCCCTTTTCCCTTCT
TTTTTTTTTTCCCTTTCCCTTCTTTTTTTTTCTTTTTTCTTTTTCTCCTC
TTTCCTCCTCTTTTCCCCCCTTTTTTTTTTTTTTCCAACCCCACCCCCAC
ACACCGAGAAGAGAAATTTTGAGGTAAGTCTTCCAAGACAAAAACTCTCT
TTTTTTTTTTTTTTTTGTTTTGTTTTTTGGTTTGTGTNAACTTTAAATTC
ACCAATAACCCCCTCTTTCGGCGCGCGTTTTCTCCCCCTTTCCCATTTTT
TCTTTTTTTTTTTTTTTTTTTCTTCTCCTCTTCTCCCCTTTTCTTTTTTT
TTCCCCTTCCCTTTCCTCTTTTTCCTTTTTTTCCTCCTTTTTCCTCTCTT
TCTTCTTTTTCTTTTTCTCCTTTTTCCTTCTCTTTCTCTCTTTTTCTCTT
TCCTTTCCTTCCCTTTCTTTTCCTTCTCTCTCTCCTTTTTTCCTTCCTCT
TTTTTCTTTTTCTCCCTTTTTTCCTTCCTCCTTTTTTTTCCCCCCTCTCT
CCCGTTTCTTTTTCCTTTTCCCTTTTCCCCTTTTCTCTCCCTCTTCCTTT
TTTTTTTCTTTTCCCCTCTTTTTTTCTCCTCTTTTTATTN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATCACCAGGCTTGGCAGCAGGCC
CCTTTCCCCAAACAGCCCCGATCTCTGGCCTGCCCCCATTAACATTTTAA
GCAAAGCAGCACAGGGCCCCAATCAGAGAGACACAGGAAAGGCACAGCAA
CTGTGGGACTCTGGGTGATGTGTGTTCCTCTCTCTTTTTCTGACTCCCAG
TCTGGTTCTCTAATGTCATATTCCTTCCCTAACCTCTCCTCACACCTCTC
CTTTTCTCAGAGAGCTCTCTGTTCTCCGGGGAGAGAGAAAAAGCATCTTC
TGGTTTGTCATANTTCTCTATGCTTTTCCCTTTCCTTCCCTATTACATGG
ATGTTGACAGTGTGAACATAAAAATACATTGCGCTGCCCCGCCCACCACG
GTTGTCCAACTGGGAAGAAGCAGGCTGTTCTACCCACACCTGTCCCTCTT
AGGTGTGAGCATGGGCAGGGGCTCTTACAACCCGAATCTCTAGACCAACA
CCCAGATTCCAAGGGCTCTTCTAAGAGCTCTCCTGAGACGACAGCGGCGG
CGAGTGGCGTTGCTTGCCAAGCCCGTAAGAAATCACTCCCTGGATCCCCC
GTTCAGATGTGCTCCAGCAACCTCCGCGATTTTGTGATGGTCTTTTCCAA
TTTCTTTTGCTCTCTTGCCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_l20.g1 MSMg01no168_l20.g1 CHROMAT_FILE:
MSMg01no168_l20.g1 PHD_FILE: MSMg01no168_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:11 2005
         (282 letters)



>mm_chr3_88457192_88457873
          Length = 682

 Score =  499 bits (258), Expect = e-146
 Identities = 276/282 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatcaccaggcttggcagcaggcccctttccccaaacagccccgatctctggcctgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aaatcaccaggcttggcagcaggcccctttccccaaacagccccgatctctggcctgccc 423

                                                                       
Query: 61  ccattaacattttaagcaaagcagcacagggccccaatcagagagacacaggaaaggcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccattaacattttaagcaaagcagcacagggccccaatcagagagacacaggaaaggcac 363

                                                                       
Query: 121 agcaactgtgggactctgggtgatgtgtgttcctctctctttttctgactcccagtctgg 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agcaactgtgggactctgagtgatgtgtgttcctctctctttttctgactcccagtctgg 303

                                                                       
Query: 181 ttctctaatgtcatattccttccctaacctctcctcacacctctccttttctcagagagc 240
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttttctaatgccatattccttccctaacctctcctcacacctctccttttctcagagagc 243

                                                     
Query: 241 tctctgttctccggggagagagaaaaagcatcttctggtttg 282
           ||||||  ||||||||||||||||||||| ||||||||||||
Sbjct: 242 tctctgcactccggggagagagaaaaagcgtcttctggtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)