BAC Information

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BAC

Clone NameMSMg01-169C14
Chromosome3 (Build37)
Map Location 41,768,671 - 41,768,945
singlet/doubletsinglet
Overlap genenone
Upstream geneLarp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
Downstream geneLOC666031, LOC100039204, LOC100039219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169C14.T7 (MSMg01no169_c14.b1)MSMg01-169C14.TJ (MSMg01no169_c14.g1)
ACCAG366115AG366116
length7021,693
length of high quality
(start - end)
289 (10 - 298)---
definitionCHROMAT_FILE: MSMg01no169_c14.b1 PHD_FILE: MSMg01no169_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:47 2005CHROMAT_FILE: MSMg01no169_c14.g1 PHD_FILE: MSMg01no169_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATAGGGAGAGGATCCGCGGAATTCTACTCTCTTCTCCAGTGTC
TGTCTTCATGGGGAATGGAGTGATTTTTGTAAGTTTTGTCATGTCAAGGA
TAGGATAAGGTGCATGATAGGTATAAAAGATGAAAATAAGGAAGGAGTCA
TATTTCAGTCACCATAAGCCTGTTTCCTTGACTTCTAAGCCACCTGACCT
GGGAACTATGAATACCAACCTGCTCCAGTTTCTAGTTCTTTCCTATTGTC
TCTAGCCCAGTCTGTTCTCTGGAAGTACTCAGCCCAGACTACTCTCTGGT
AATATTCAGCCCAATAGAGTAAAACTTCTGAATCACAGATTATATTTTTC
ACCCCTTGCCTGCCCCATTCATTTCAACATTATGTGCAAGTGGAATAGCT
ACTATCAACTAAAACTGAATCATTTTATTTCTTCTCCATTCAACATAGTA
TCAAGATCTTGAGAACTAGGTCCTTGCTGCACAAGCACAAAGCTCTGAGT
TCAACCCCCTAGAACTCAGAATTTTAAAAAGTCATGGGTGAAGGTTCACA
TTTGTAACTTCAGATCTTCCAATCTAGCCTAAGAGGTGAACACACCAGGC
TAACCAAGAGATCCTGTTTCTAAAACCAGAGAGACACTCCGTGTTGAACT
CTGAATTCCACCATATGCGCAGACACACTTTGGTATACACACACACACAA
AA
CCCCCTTTTATACTCCTTCTCCCACACCCCTGTTCTNCTAACGCATTTTC
CTACTATATTTCGCACGCCTCTCGTCTTNCGCGCTGGCNCCTAGATATAG
AATATAGACATNGATGTACGCGANCGGCTNCGGTTGACGAGTTAGAAGCA
CGCGTCATAGCTCCAGACTAGTGAACGATGACGACCACGCGCGCGCGCTT
AAGATGATGACTCGCGCGAGCTATTATGAGTTGACTATATGACCATATTG
TACAACATTCTACTAGATACTGAACAGAATAGGTAGCGATGTACAACTAC
GATTACGATATAAAGCTCAGTCATGTATGAATGCATCGATAGATAGTGCT
GTTGTCGCGTAGTATTACGTGCTTGAANAAGATGACGCAGGCATGCGTAA
ATCACAAGCTATTGTGCGCCTACATTGCTCCTCTAGTGACTAGCAACAGA
ACACTATCTAGTGCATATGATACCAACTGTGGCGTGATGCGAGCAGTGGT
GGTGCCCGCGCGTTTGTATGTGTACGAGGAATATACGCGCGTGTCTCCAC
CCTGTACACATGTCTTCTATGTTACCTCATCTGCGACTGTCGCCTCACAC
GCTATATATTCTATATATATGCGATGTGTCCTCGATATTAGATTATACAG
ATGACATATATATGATATTACGCAGTCTATCACGCGTCTGATAATGACAT
TCCGTATCTCGCTATGTATATAACGTGCGCTCGTCGTCGGATAGACATAA
CGCGACGTGCGTGTGTGCCATGTGTGTGCGACGCATAATATGGTGGCCGG
CGGCGCGAGGGAAGATAATAGTTGTGATGTGTGTGACTATAACACGCGAC
TCAGCACGCTCACGAACTCATATATATNGTGTGAGTGCGAGCGGTGATCA
GAACATGTGTTCGCTTAGATGTCTGAATGGATGTAGTGTCTTGTATGATG
CTTGCAGAACGGTTGCTGNGACGTAGATATATGTAACGTGATGAGTGACA
TGTGNGTTGTATGATAGGAGACGCGCCGCGTCAATGTCACGATAGTTATA
TGTGCACTCGTGATAGATGAGTGGTCGCGCGGCTCTCGACTGCGTGATGA
GTGTGTGCTCTACTGCGTGCGTGTGATGATAGGTNTATACAAGACAGTAT
GATGACACCGCCGCGCGTTAATATGAGAGTGATATATACGCGGCGCAACG
CTGTAGCNGCGATACTAGATGAAACTGATTATATATAGACAAGACAGCGC
GATCAGCATAGCATGTAATATGTGCGATTATACACGCCTCACGACATACG
ATATACCTACTCGACACGCGAGACTCTAGATGCTGTTCGCACTTGTACNC
TCTGATGTATCGCGCCGATATATCGTATAATTNGATATACAGGTACAGTA
CANACACGTATTCTTTAGATCTCTCTNTAATATAACGAGACACAGGAGAT
GAGGGCAGTCCGAACGACCCACGACGGCGATAATTAATGTAGTTGACATA
TAGACAGTAATCGCCNTGTNATGATTACGAGATGCGCACATATGGAGTCG
TANTGATGGTACACGANGACGCGTATGTTAGATGCGTAGATGTATGGCNT
TCTCATGATGCAACATACTACACGTATAATGGTCCCGATACNACACANAG
GACGAGTATAGCGACTAACAATACACTATCATAGTATATATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_c14.b1 MSMg01no169_c14.b1 CHROMAT_FILE:
MSMg01no169_c14.b1 PHD_FILE: MSMg01no169_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:47 2005
         (289 letters)



>mm_chr3_41768455_41769145
          Length = 691

 Score =  485 bits (251), Expect = e-141
 Identities = 269/275 (97%), Gaps = 2/275 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattctactctcttctcc-agtgtctgtcttcatggggaatggagtgatttttgtaagt 75
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gaattctactctcttctccaagtgtctgtcttcatggggaatggagtgatttttgtaagt 432

                                                                       
Query: 76  tttgtca-tgtcaaggataggataaggtgcatgataggtataaaagatgaaaataaggaa 134
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttgtcattttcaaggataggataaggtgcatgataggtataaaagatgaaaataaggaa 372

                                                                       
Query: 135 ggagtcatatttcagtcaccataagcctgtttccttgacttctaagccacctgacctggg 194
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 371 ggagtcatatttcagtcaccataagtctgtttccttgacttctaagccacctgacctggg 312

                                                                       
Query: 195 aactatgaataccaacctgctccagtttctagttctttcctattgtctctagcccagtct 254
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 311 aactatgaataccaacctgctccagtttctagttctttcctattgtccctagcccagtct 252

                                              
Query: 255 gttctctggaagtactcagcccagactactctctg 289
           |||||||||||||||||||||||| ||||||||||
Sbjct: 251 gttctctggaagtactcagcccagtctactctctg 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 691
Length adjustment: 9
Effective length of query: 280
Effective length of database: 682
Effective search space:   190960
Effective search space used:   190960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)