BAC Information

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BAC

Clone NameMSMg01-169G05
Chromosome3 (Build37)
Map Location 48,131,746 - 48,132,053
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039426, LOC666202, LOC666208
Downstream gene1700018B24Rik, LOC100039404, EG666230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169G05.T7 (MSMg01no169_g05.b1)MSMg01-169G05.TJ (MSMg01no169_g05.g1)
ACCAG366273AG366274
length692687
length of high quality
(start - end)
314 (45 - 358)---
definitionCHROMAT_FILE: MSMg01no169_g05.b1 PHD_FILE: MSMg01no169_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:04 2005CHROMAT_FILE: MSMg01no169_g05.g1 PHD_FILE: MSMg01no169_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACTGGATTGATCTGTGCAAATCTTGGGCATGTAGTCATTGCCCCT
GTGAGTTCATGTGTTCAAAGCCCTAGCCTCAATGGGTTGAAAAACAACAA
CAAAAAGACAAAAATAAAAACTAAAGCAGAGACAATAGAGTTGGGAAGAA
AGTAGGGTAAGGAATAGAGAAAGAGTTGGAGTATAATCGTTGGGATGGAT
TTGATTGAAGCATTATATGTACATGTAAAATCTTAATCATTAAAAACATA
AATGAAAACTCTCTTTATTACTTCACACTATATGAAAAAGAAGAATCTTA
ATACTANANATAATCTACNTTGGCGNATNCCGAATAGAAACATATATTAA
CTAGGGCTTAGCTTTCTGAGCAAACAAAGATAATACATAGTACAAGCAGC
AGAGGAAAACAGCTAGTAATTTGAAAAAGCTTCTCTCCCCCACTCTTCTC
CTCTCTTTCCACAAATAACAGATCAAAGGAGATACTATCTTCTTACCACC
ACTGTGTACCACTACTAATTTTATTTGATATAGTTTCTTTAGCTAGTATT
TGTAAAACAATATACAAATAGGCAGTACCCACACATGAAAACTGTCAGTC
ATTGTGATGTGAATTTGGACAGTATAGCTTCCCTCTGAATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCCTTCACCTCGTTTATCATGA
AAGGCAGTGGTACCATCGTCACTTGCTTGTTCTGCATGAAACGAAATGAT
ATGGAGCCTGTTGTCTTTGACCTGGCTTATTGAATGAATTACTGTGATGG
ATTTTCAGATATTACAGCCTCCCAGCGACCCTGAAATAGAACCTACTTGA
GCGAGATGAATGATTGCTTTAATGTGATCTTGTATGCTACTAGCGAGAAG
TTTATTGAAGATTTTTGCATCGATATTCATAACAGACTGTGGGCTGACGG
ACACAATCTTTGTTTTATCCCCCCCCCCCCCCCCAATCAGACAACTATAG
ATTTCATATCATGACTTGTCTACAGTACATTAAACTTCAATTTTGAGAAA
TGGGTCGTGCATAATTGGAATTACATCTTCCTTCAGGGTCACATAGAATT
CTGCTCTAAACCCATCTGCTCCTGGCTTTTTTTTGCTTGGCAGACTATTA
CTAACCGCTTCCATTGCTCTATGCGATATGGGATTGTTCACATGGGCAAC
TGGATCCTGATTCTGTTTTGGAACCTGTAATCTGCCCAGAAATTTGTCCA
TTTCGTCCAGGTTTTCCAGTTTTGATGAGTATACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_g05.b1 MSMg01no169_g05.b1 CHROMAT_FILE:
MSMg01no169_g05.b1 PHD_FILE: MSMg01no169_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:04 2005
         (314 letters)



>mm_chr3_48131405_48132118
          Length = 714

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccactggattgatctgtgcaaatcttgggcatgtagtcattgcccctgtgagttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaattccactggattgatctgtgcaaatcttgggcatgtagtcattgcccctgtgagttc 590

                                                                       
Query: 65  atgtgttcaaagccctagcctcaatgggttgaaaaacaacaacaaaaagacaaaaataaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 atgtgttcaaagccctagcctcaatgggttgaaaaacaacaacaaaaagacaaaaataaa 530

                                                                       
Query: 125 aactaaagcagagacaatagagttgggaagaaagtagggtaaggaatagagaaagagttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aactaaagcagagacaatagagttgggaagaaagtagggtaaggaatagagaaagagttg 470

                                                                       
Query: 185 gagtataatcgttgggatggatttgattgaagcattatatgtacatgtaaaatcttaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gagtataatcgttgggatggatttgattgaagcattatatgtacatgtaaaatcttaatc 410

                                                                       
Query: 245 attaaaaacataaatgaaaactctctttattacttcacactatatgaaaaagaagaatct 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 409 attaaaaacataaatgaaaactctctttaatacttcacactatatgaaaaagaagaatct 350

                   
Query: 305 taatacta 312
           ||||||||
Sbjct: 349 taatacta 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)