BAC Information

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BAC

Clone NameMSMg01-169I20
Chromosome3 (Build37)
Map Location 119,004,496 - 119,004,777
singlet/doubletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169I20.T7 (MSMg01no169_i20.b1)MSMg01-169I20.TJ (MSMg01no169_i20.g1)
ACCAG366389AG366390
length719704
length of high quality
(start - end)
317 (44 - 360)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no169_i20.b1 PHD_FILE: MSMg01no169_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:16 2005CHROMAT_FILE: MSMg01no169_i20.g1 PHD_FILE: MSMg01no169_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTAGCTCTGAGCCCCATTTTTAAAGGGGTTATTTGATTTTCT
GGAGTCCACCTTCTTGAGTTCTTTATATATATATTGGATATTAGTCCCCT
ATCTGAATTAGGATAGGTAAAGATCTTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATG
AGGTCCCATTTGTCGATTCTTGATCTTATAGCATAAGCCATTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTATTCATATCTTCAAGGCTTTTCTCTACTT
TCTCCTCTGTATTAATCATTGTCTCTCGGTTCTAGCCGCAGTTCCTTAAT
CCACTTATATATGACCTTAGGACAAGGAGATAAGAAAGAATCAATTTGCA
TTGTTCTACATGATAACTGCCTGTTGTGCCAACACCATTTGTTGAAAATG
CTGTCTTTTTTCCACTGGATGATTTTTGTTCCTTTGACAAAGATCAAGTG
ACCATAAGTGTGTGGGTTCATTTCTGGGTCAACAATTCTATTCCATTTGG
CTACTTGTCTGTCACTATACCAGGACCATGCAGTTTTTATCACGATTGCT
CTGTAGTACAGAAACTATGAGAGAGTACCCATTAGCAGGTTGACAACACA
CCTAAAAGCTCTAGAACAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGTACTCTGAGTTTGTCAGACAT
GCTACAATTTAAGAAGTTACATAAGACAATAAACAAATTGATATACTGAA
ATAAAACAGGATAAATCACTTCTGTACTGTTGGGATTTATCAGTGAGTCA
TGATTTTAAAAAACTACTTTAAAAATATTTAATAAGGAGAACTGCTCTTC
CGTTAGGCTTTTCTCCTGAACCTTTAAAAAGCACATTTGTGCAGCTATTG
TTGTTCTTTTTCCTCCAATCCAATCTGTTGTGGTCAAGACATAAAAAAGT
GAACTCAAATTTTTTTTTCTTACCACCCCGCCATTTGGACAACTCTTTTA
CTTAGTGATCCAGTGCAGTTTAAAAGCAAAGATGAAATAAGCCTTCTCAT
TTGGAGGGAAGCAAGATGGCATTCTGCTGAATGCTAGAATTTTACCACTT
TGAGGGGGGAAACTGCTTGAGAGACCTAAGAATATAAAAGCATTTGAGAT
CTCAGAAGGAGTTTAAATCAATGTACTACAACAGTTACTGAGCAGATGAA
AGAGCCTGCTGTCTCAATTGCCAGGAATCTACTTAGAAACTCTCACTTTG
ATTTCTTCAGGTCGTCTGCTACATTATTGCTAAATGCAATATAGAGGGAC
ATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_i20.g1 MSMg01no169_i20.g1 CHROMAT_FILE:
MSMg01no169_i20.g1 PHD_FILE: MSMg01no169_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:16 2005
         (282 letters)



>mm_chr3_119004296_119004977
          Length = 682

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtactctgagtttgtcagacatgctacaatttaagaagttacataagacaataaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtactctgagtttgtcagacatgctacaatttaagaagttacataagacaataaacaa 260

                                                                       
Query: 61  attgatatactgaaataaaacaggataaatcacttctgtactgttgggatttatcagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgatatactgaaataaaacaggataaatcacttctgtactgttgggatttatcagtga 320

                                                                       
Query: 121 gtcatgattttaaaaaactactttaaaaatatttaataaggagaactgctcttccgttag 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcgtgattttaaaaaactactttaaaaatatttaataaggagaactgctcttccgttag 380

                                                                       
Query: 181 gcttttctcctgaacctttaaaaagcacatttgtgcagctattgttgttctttttcctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttttctcctgaacctttaaaaagcacatttgtgcagctattgttgttctttttcctcc 440

                                                     
Query: 241 aatccaatctgttgtggtcaagacataaaaaagtgaactcaa 282
           ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 aatccaatctgttgtggtcaagacatagaaaagtgaactcaa 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)