BAC Information

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BAC

Clone NameMSMg01-169L21
Chromosome3 (Build37)
Map Location 114,445,668 - 114,445,910
singlet/doubletsinglet
Overlap genenone
Upstream geneCol11a1, LOC100043220
Downstream geneOlfm3, EG546808, Edg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169L21.T7 (MSMg01no169_l21.b1)MSMg01-169L21.TJ (MSMg01no169_l21.g1)
ACCAG366519AG366520
length712743
length of high quality
(start - end)
316 (46 - 361)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no169_l21.b1 PHD_FILE: MSMg01no169_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:31 2005CHROMAT_FILE: MSMg01no169_l21.g1 PHD_FILE: MSMg01no169_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGCTCACTTCTTTTCAGCTCAG
TTTTTCTCACCTCAGTTCTGACTCCCCTCTTTGTCCTCAGCACTTAAACA
ACGTTCAGAATACATGATCACATGTTAAAAAGTTCATCAAAAGTTCACAC
ACAAAACTAAATCATAAATTGAAATAGAAGTTTGCAACAGAGAATGTTTA
CATGCATATCCATTAGGAGTAATTATCTAGGTAAACATTCATCACCTGCC
TCAGTTCCACACATTCACTGGAGGTTTAAAACCGTAACTAAGTTATTCTT
GAAGTTTTGTATAATAAATTCTACANTTCTNGNCCAGCACCTATAATAAA
TCATTAGTTCCCTTTTATGACCTTTAAAAAAATAAACTACAACCTCTTGG
AATGTGCTCTGAGTAGGAGAAAGTCTGGTTACCATCTAAGAGCAGACTGG
AAGAGTTCTTATTGCAGTTTTGATTATCAGAAAAGGACCTAATAGCAGTT
CCACTATAAAAACGCATAATAATCACAGATATAATTTTAAGAATTCTTAT
AGGATCATCCTTAAAACTTAAGTCATCTATTTGCCTACATAACATCACTA
CAAGACAGTACATCATTGTGGATCTGCAGAGATTTGCTCCAAACGGGTGT
GCTATTACTTAG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGCTTGAACCTCATATAGGAT
TCTTAACAGTGGAAGCAGGTTTTGCCTCTGGCATTTTTGCATACCTTTGG
ATCAGTTTGCCCTAACTGAGCTTCATCTAGTCACAACAGCAGAAGAGGCA
CCTAGTCTTATCTTCTTACTTGATGCCCATGGGAGGACTTGCCTTTGCTG
AGGAAAAAAGGAGGAGGGGAAGGAAAGTGTAATGGTGGGATTGAGAGGAG
AAGAGAGAGGGAAAGCAGCTATTTGTTTGTAAAGTAAATAAACAACTTAA
TAAAATATATGTTNGATANGTTCCCAAACCAANACCCCCAGATTGNTGTG
AAAAATGACCTTATTACCNAATCAAAAATAAAAAAATAAAGCTCGGGGGG
TGGGGGGGCACACACACACATTGCACGCACATGTGCACAAATATGTGTGT
GTGTGCGTGTATGTACATATATTGAGTATGGTATCTTTTATTAAACTATC
TTCTTATATGAAATATATACATATGTGTGCCATAGATATATATATATATA
TATATATATATATATATATATATATCTGTAATTATTTTTCAATATTTACA
TACCCTTTTATTATGTAATGTTTTTGAAAATTTTAATAATTTGTTGATAA
TAGGAAGTTTATTTCCATTAATAAATCTTTTGTTTGATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_l21.g1 MSMg01no169_l21.g1 CHROMAT_FILE:
MSMg01no169_l21.g1 PHD_FILE: MSMg01no169_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:31 2005
         (244 letters)



>mm_chr3_114445335_114445978
          Length = 644

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgcttgaacctcatataggattcttaacagtggaagcaggttttgcctctggcattt 60
           |||||||||||||||||||||||||||||||||||||||||||   || |||||||||||
Sbjct: 576 tgctgcttgaacctcatataggattcttaacagtggaagcaggggctgtctctggcattt 517

                                                                       
Query: 61  ttgcatacctttggatcagtttgccctaactgagcttcatctagtcacaacagcagaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttgcatacctttggatcagtttgccctaactgagcttcatctagtcacaacagcagaaga 457

                                                                       
Query: 121 ggcacctagtcttatcttcttacttgatgcccatgggaggacttgcctttgctgaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggcacctagtcttatcttcttacttgatgcccatgggaggacttgcctttgctgaggaaa 397

                                                                       
Query: 181 aaaggaggaggggaaggaaagtgtaatggtgggattgagaggagaagagagagggaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaaggaggaggggaaggaaagtgtaatggtgggattgagaggagaagagagagggaaagc 337

              
Query: 241 agc 243
           |||
Sbjct: 336 agc 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)