CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGACTGATATTAAAGTTAACACTGGCCCTGCCCCACGTTGCCCAGT
ATCCTTCACGGAGTTCACTCCTAGCGGAAGCACTGCCATCATGTCTGACA
AAGTCAAGGATATCAGACTGGCTGCCTGTGAATGGAAGGCCCTGCACATA
GCTAAGAATGAGATGCAGGATTGATGCACATGCAGGAGATGTACTCAGCC
ACCAAGCCATTTATGGGTGCTAGCATTGCTGCCTGCCTGCACATGACTGT
GGAGAATGCTATTCTCATTGAGACTCTTGTGGCCCTGGGTGCTAGCTAAG
GTGCGGTAGCCCATTNGNATTANCTTCCAGNNACGANGNCAGCAGCTGCC
ATTGCTAAAGCTGTCATTCCAGTGTTTGCAAATATAAAAAAACTTTGCAG
TGTTCTGCCCATCCCTCTGAGCTCACCCCCTCTGGGTTTGGCCACACTGT
CTTTGACTTTTCCTGTATCCCTCATACTGTTGTGTTCCAGGTGTGGTAGG
CGAAAGGAGACGTACCTGGGAGGCATCCACCAGGGACTGGAGCTCTTAGA
AGTCCTGAGGCTGGATGTTGCTAGTGATGGTCACAAGCCCATGTACCTTG
TCATCTATATCTTCACTTGGTCTTTATGTCTGTGTGCTTGGTTTATAGAT
CCCCTGGNTTCTCAGCCCAGGACCCAAGAAGGAGCTTCTACCATG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAACCAAGGTAGACCAGGGCTGACTG
AAAAGAACCTGAGCTCAGACAGAGCTTCTGTGTCCCTGCTCCTGCTGGCT
CCAGGCACTTCCAGTTGTGTTGGAACAAATGTTGTATTCCACTCACCAGT
GAGCCTGAGATCCTGAACATGCTAGCTAGGGTGCCTGGGGGGTGGAAAAT
CGTCTGAGGATTGTGCGACTGTCCACTGAGTTCACACGCAAGGTGGCCCG
GAGCTGGCACCAAATGTAAGGCTATATTTTATTTCTATTAGTAGTATTGT
TCAGCCTAATATTTTTTATTCAGGCAACTACATAAGTAAAAATCCTATGC
ATACTGAGATTAGTTGGAAGAAGTGTGGAAAGGATAATAATATATTAAAC
CATACCCCTATAGGAATTTTGGGTATGACTTCTTCCAGGGATGAAAACTC
AGAATTAGGACATGATATATAAAGAAAAGGCCGTTAAAAAATAAACAAAA
AAAAATCAGACCATTACCTTAACAGGTACTAATGTGCTAAAGATAACATA
CAGAATGTGGTGTGCTATAGATAACATGCAGAAGCTATCTCTACAAAAAT
ATGCCCTTCACTACTATATTTTTTATAAAATGTTTGGCAACAGCGATATC
TTCAGACCATTGCATTTTTTTGCACATATTTAACCGCCCCTTATTTTT

Query= MSMg01no170_c22.b1 MSMg01no170_c22.b1 CHROMAT_FILE:
MSMg01no170_c22.b1 PHD_FILE: MSMg01no170_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:04 2005
         (322 letters)



>mm_chr3_47881873_47882594
          Length = 722

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgactgatattaaagttaacactggccctgccccacgttgcccagtatccttca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgactgatattaaagttaacactggccctgccccacgttgcccagtatccttca 264

                                                                       
Query: 65  cggagttcactcctagcggaagcactgccatcatgtctgacaaagtcaaggatatcagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cggagttcactcctagcggaagcactgccatcatgtctgacaaagtcaaggatatcagac 324

                                                                       
Query: 125 tggctgcctgtgaatggaaggccctgcacatagctaagaatgagatgcaggattgatgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggctgcctgtgaatggaaggccctgcacatagctaagaatgagatgcaggattgatgca 384

                                                                       
Query: 185 catgcaggagatgtactcagccaccaagccatttatgggtgctagcattgctgcctgcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgcaggagatgtactcagccaccaagccatttatgggtgctagcattgctgcctgcct 444

                                                                       
Query: 245 gcacatgactgtggagaatgctattctcattgagactcttgtggccctgggtgctagcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcacatgactgtggagaatgctattctcattgagactcttgtggccctgggtgctagcta 504

                          
Query: 305 aggtgcggtagccca 319
           |||||||||||||||
Sbjct: 505 aggtgcggtagccca 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no170_c22.g1 MSMg01no170_c22.g1 CHROMAT_FILE:
MSMg01no170_c22.g1 PHD_FILE: MSMg01no170_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:04 2005
         (289 letters)



>mm_chr3_48028239_48028927
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaccaaggtagaccagggctgactgaaaagaacctgagctcagacagagcttctgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aaaaccaaggtagaccagggctgactgaaaagaacctgagctcagacagagcttctgtgt 569

                                                                       
Query: 61  ccctgctcctgctggctccaggcacttccagttgtgttggaacaaatgttgtattccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ccctgctcctgctggctccaggcacttccagttgtgttggaacaaatgttgtattccact 509

                                                                       
Query: 121 caccagtgagcctgagatcctgaacatgctagctagggtgcctggggggtggaaaatcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caccagtgagcctgagatcctgaacatgctagctagggtgcctggggggtggaaaatcgt 449

                                                                       
Query: 181 ctgaggattgtgcgactgtccactgagttcacacgcaaggtggcccggagctggcaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctgaggattgtgcgactgtccactgagttcacacgcaaggtggcccggagctggcaccaa 389

                                                            
Query: 241 atgtaaggctatattttatttctattagtagtattgttcagcctaatat 289
           ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atgtaaggcaatattttatttctattagtagtattgttcagcctaatat 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)