BAC Information

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BAC

Clone NameMSMg01-170C24
Chromosome3 (Build37)
Map Location 122,627,199 - 122,627,487
singlet/doubletsinglet
Overlap gene1810037I17Rik
Upstream geneArhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2
Downstream geneUsp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170C24.T7 (MSMg01no170_c24.b1)MSMg01-170C24.TJ (MSMg01no170_c24.g1)
ACCAG366837AG366838
length1,743774
length of high quality
(start - end)
---290 (79 - 368)
definitionCHROMAT_FILE: MSMg01no170_c24.b1 PHD_FILE: MSMg01no170_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:04 2005CHROMAT_FILE: MSMg01no170_c24.g1 PHD_FILE: MSMg01no170_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:04 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TAAGAATGTATCGAGCGTAGACAAGCACGCAACATAAGACACAACTGCGC
TGTAGACAGATGATAAATTTGCGTACGTTTCTACTGTACGTGTGACCATT
GATAAATACACGCGCTGAGCATGTTTATTCTTAGCGTCTGTATCATACTG
TGCCGATACGTGTGCGAGTATAGCTATTTAATATCGCCGCCCATATCCGC
TTATTATCCATGCACCTACTTGATAATACTAATAGTGCTGATGAGCAGCA
CATATATGTTTATAACACATTTGACGCGCTAACTCTGATCTTGACGCAGA
CCGCGTATCTACGCTGATCGCGCGTCCCGTTATCGTGATAATACATTTAA
CGGCGCGCTCTCTAGCCGCGATAATATTATGCCGCCCGGTAGAGTACATG
GATCATGTAAATCTCTGCAACAGAAGCAATGCGTCGCACGGACATAATTC
ACTAAACAATATATTAAATATATCATAANAACACTATACAGACCTACCGC
TAAACGACCACGCGCGCACGGTAAACAACACGGTGATGTCAGTAATCATT
TCAATGCGTACAACCGTTAAATAAATATAAACATGACACATTACACGACG
TCGACTAATAATGGTAACGTTAGCCGCGCGTATTCACTGTATTTGTCCGC
CGGTCGTTAATAACAGCGCAATCATAGATCTACCATAGGACTATATGCGC
GACTATCGTAAGACGCCACTACGATGAATATATGAGAACAATTAGGAGAG
TATGCTCTCGCCCATATTTGAATGTGACCGACCTCGTGTTAGACGCAACG
GGTAAGTGTAATCTGGAGATGTATCCGAGGGCCGCCGGGCTCAATGGGCG
GCGAGGGNNGGCGCGGGCGTTTTTTTATTGNTATTCTGAGCATTATACTA
TATTAACGCAGCTCTCATATACATCTCNATAAGTGATCGCGGCGATGTCT
CTCGCGAGACGCGTGAATTATGGTGCGCGCGATGTGCCTCGCGCTGCTGC
GCCGCACTATATAGCATGCTCGTCACTTCGCTACTCTCGAAGTACTGATG
ATCCACGTTAGAGCTATCCGCGTATGTGTAGCCGCTCCGATGGCGCATCT
TACGTTAATATCATCCGCTATCTACCACGTCATCTATATATCGCCTTATC
GCGCACGCGTATATATTCTGATTAGAACGCACGTCATATATTGTGCGCCG
ATATAGCACGCGCCGCTCTCGCCGATTCTCGACCCACTATTACGTATGTC
ACGAGATACCGCCGCCGCATATCTTAAATNCGCCCGTCTTATTCTCATAT
ACCNCGCATNTCGCTCTACGCGAATACGCATATGATTGACTCACTCTATT
TGTCGCTCTGTCTCTTATCGCTATATTGAATCAAGGCAGAGCAATCTGTC
CACCTATATANCGCCTGACTGTATCAGTGNTAGTNCTATAGAGTATAAAG
TGTCGTCGCTTGACGGCGTCATTTNTTATNTCTCACGAGCGCGATCGGCG
ACTGGCGTGAGACTGATACTTACATTTGTACACCGCGTGTATATGTGTAT
ATATANCTTACTACCCGCGCGCGTCTATCTGANTACACACGACNTNGCTC
ACTTGGTACCTACCACACCCGCACGAGCATGNGTATAACGTCTGCTTGAT
TAGATCAACCGAACTAACGTGAGTATACCACGCGCCGAGCACGCGACTAT
ATATGTACGCGAATATTAGTTGTCTGACTACTNCGAGCGCGTN
NTCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAAAGGGAGGACGCCTGCG
CAGTCCGGAAGGCGGGGACGCGGGGGCGGGGCGGGGCGCGGCGGCGGGGG
CGGGGCGCCTAGTCGATTGGCGGGGTTACCCGGAATTGGTTGCTAGACTG
GGCGCGAAGCGGTCTTCAGGTTTGGTCTCAGTTGCGCGGAAGTGAAACGA
CGCGGAGATGGAGGTGAGCCAGGCGGCGTCTGGTACCGACGGTGTCCGGG
AACGGAGGGGCTCGTTCGAAGCTGGAAGGAGGAACCAAGATGAGGCACCT
CAGTCCGGGATGAACGGTTTTCTCNATTTACTCCTACTGCCTGGATCTCT
GGCTCTTCATCCTTTTCGACCTGGCCTTGTTCGACATCGAGAACCTCTTG
CCCTGGTGAGTATCCTGAGTTGCAGAGTTGAAGAGCTTAGGAAGCTGGCG
GTTGCTTCAGTCTTCTCGGAGAGGGAGGGAGGGACGGCAGCTAGAGATGG
TGGACTCGGAAGAGCGAAAATGCATTTCCTTTGACCCCCACTGTGCTGAG
GACTGTGCCACAAATTTGACTTCCCCCATTTGCCCGCCTCCTCACCACTT
ACCAACCGTTAAGTGTCCCAACCCCATCCCCCCCACTTTGATTTTACCCG
CCCCCTCTCCCCACACACCCTCCTATCACCCGCCATTCCCTCCCAGCTCC
CTCATCTTCCCCTCCTCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_c24.g1 MSMg01no170_c24.g1 CHROMAT_FILE:
MSMg01no170_c24.g1 PHD_FILE: MSMg01no170_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:04 2005
         (290 letters)



>mm_chr3_122626999_122627688
          Length = 690

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaaagggaggacgcctgcgcagtccggaaggcggggacgcgggggcggggcggggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagaaagggaggacgcctgcgcagtccggaaggcggggacgcgggggcggggcggggcg 260

                                                                       
Query: 61  cggcggcgggggcggggcgcctagtcgattggcggggttacccggaattggttgctagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggcggcgggggcggggcgcctagtcgattggcggggttacccggaattggttgctagac 320

                                                                       
Query: 121 tgggcgcgaagcggtcttcaggtttggtctcagttgcgcggaagtgaaacgacgcggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggcgcgaagcggtcttcaggtttggtctcagttgcgcggaagtgaaacgacgcggaga 380

                                                                       
Query: 181 tggaggtgagccaggcggcgtctggtaccgacggtgtccgggaacggaggggctcgttcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaggtgagccaggcggcgtctggtaccgacggtgtccgggaacggaggggctcgttcg 440

                                                            
Query: 241 aagctggaaggaggaaccaagatgaggcacctcagtccgggatgaacgg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagctggaaggaggaaccaagatgaggcacctcagtccgggatgaacgg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)