BAC Information

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BAC

Clone NameMSMg01-170F19
Chromosome3 (Build37)
Map Location 152,746,177 - 152,882,230
singlet/doubletdoublet
Overlap geneLOC100040750, St6galnac3
Upstream geneGipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
Downstream geneEG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170F19.T7 (MSMg01no170_f19.b1)MSMg01-170F19.TJ (MSMg01no170_f19.g1)
ACCAG366955AG366956
length747738
length of high quality
(start - end)
228 (122 - 349)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no170_f19.b1 PHD_FILE: MSMg01no170_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:17 2005CHROMAT_FILE: MSMg01no170_f19.g1 PHD_FILE: MSMg01no170_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,746,177 - 152,746,396)(152,881,942 - 152,882,230)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTCTTCAGAAGCGGATCAGAGCTGTTGGCAACAAGTTTTACTGGAG
TCCCAACTCACAAGCAGAATGTTCGAATAAAAACTCATTGTCTCAGGGTT
TTACATTGTTGTAAAAGCAATTTATTAGAAGAAACACAACAACTACAACA
AAAATAGGCACCTTTGGGGGTAGGAAAGAGTATGGTGCTTATAAATGAAA
TGTTTGATTTTATTTTCTCTTTGCTTGTGAAAACGTTGCCACAACACTGC
TCTGTTCCCATCCTATTTTCTCTCGCACAGCACCACTGCCTGGTTTGAAA
ACGCCTTAGATGANTTCCCCCCACCTCCCTCTTCCTTAAGCTTGTAACAG
GTTTCCACTTGAGGAGGGCCAAAAAAAAAAATTTCTCAGCATACCCCCAG
GGAGCCTGTCATGCTCGGACAGATCTGGAGAACAGCCTAGCCCTCTAAGT
GGGAATCACCAACCTCTGCCTGTGTTCCCTTTTGCCCCTGGTCTCCTTTG
CTGTGGCTTCCAGGCAGAATGTACTGTGAGTGTTGAGTTGAGCGAACAAC
AAACAACTCCATTTTCTTTGGAAGGCTCCTTTGGCCTCAACCCCCCAGGA
GGACCAAATCCCATTTCTCTATCCTTCCTGAGGCCCAGCGTCCCAGGTGA
GACAAAAAGGCCCTTTTTTCGTCCATATTTTATTGTAGCTCTTTACG
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGGGATGATGTTGTAGAGTCAGT
TCTCTCTTCTAGCTTGATAGAGGTTCTGGGGAATCAAACTCAGTTCATTA
GGCTTGTATGGCAAGCACCCTTCCCCTCTGGCCTATCTGACTGATGGATT
CTGAAGTCACATTGTGTCATCCCTCATCCCAGAATCCCCCCTACTTGGAA
AAAACAACTAAGGGTGAAGATCCGTATCTCCAGGCCCTGAGGGTGTCTCA
GAGGGTGCCTATCCTTAAAGTAGCAGTAACATCTGTTTTTATTTCTACCC
GGACAAAAAGCCTTTAGTATTTTACCCCGCTCTCCCCTGAACCATGTCTC
TGATAAACAGCCCTGGTCGAGAGCCTGCAGAAATAGAACCAAGGGAACCT
GGCTGGAGAAGCGTGGAGATCAGATGAAGCTGCTCCTGATTTGTAACATA
GTTTATAACACAGTTGAACACTCAAGGTGCATCCATCATCCCCCAGTTTT
AATTATATTTATTCTTAGTCGTATGTTGTTTACATTTGTTCTCAATTCTG
AATTAATGAGGAATTTAATGAGGAAGAAAAAACATAATTCTGCCAATTTT
CTTCTGGATATTTTCTCAAGATCCATAAATTTCATTCCTCTGNCGGGAAC
AATAGCAATACCAAACATTAAGATATCGCTAATATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_f19.b1 MSMg01no170_f19.b1 CHROMAT_FILE:
MSMg01no170_f19.b1 PHD_FILE: MSMg01no170_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:17 2005
         (228 letters)



>mm_chr3_152745973_152746600
          Length = 628

 Score =  379 bits (196), Expect = e-110
 Identities = 214/220 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   aataaaaactcattgtctcagggttttacattgttgtaaaagcaatttattagaagaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aataaaaactcattgtctcagggttttacattgttgtaaaagcaatttattagaagaaac 264

                                                                       
Query: 65  acaacaactacaacaaaaataggcacctttgggggtaggaaagagtatggtgcttataaa 124
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 acaacaacaacaacaaaaataggcacctttgggggtaggaaagagtatggtgcttagaaa 324

                                                                       
Query: 125 tgaaatgtttgattttattttctctttgcttgtgaaaacgttgccacaacactgctctgt 184
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 325 cgaaatgtttgattttattttctctttgcttgtgaaaatgttgccacaacactgctctat 384

                                                   
Query: 185 tcccatcctattttctctcgcacagcaccactgcctggtt 224
           | ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttccatcctattttctctcgcacagcaccactgcctggtt 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no170_f19.g1 MSMg01no170_f19.g1 CHROMAT_FILE:
MSMg01no170_f19.g1 PHD_FILE: MSMg01no170_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:17 2005
         (289 letters)



>mm_chr3_152881630_152882318
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgggatgatgttgtagagtcagttctctcttctagcttgatagaggttctggggaatca 60
           |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 601 atgggatgatgttgtagagttagttctcttttctagcctgatagaggttctggggaatca 542

                                                                       
Query: 61  aactcagttcattaggcttgtatggcaagcacccttcccctctggcctatctgactgatg 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aactcagctcattaggcttgtatggcaagcacccttcccctctggcctatctgactgatg 482

                                                                       
Query: 121 gattctgaagtcacattgtgtcatccctcatcccagaatcccccctacttggaaaaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gattctgaagtcacattgtgtcatccctcatcccagaatcccccctacttggaaaaaaca 422

                                                                       
Query: 181 actaagggtgaagatccgtatctccaggccctgagggtgtctcagagggtgcctatcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 actaagggtgaagatccgtatctccaggccctgagggtgtctcagagggtgcctatcctt 362

                                                            
Query: 241 aaagtagcagtaacatctgtttttatttctacccggacaaaaagccttt 289
           |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 aaagtagcagtaacatctgtatttatttctacccggacaaaaagccttt 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)