BAC Information

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BAC

Clone NameMSMg01-170L19
Chromosome3 (Build37)
Map Location 18,270,910 - 18,271,218
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
Downstream geneLOC622921, LOC100040153, Armc1, Mtfr1, Pde7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170L19.T7 (MSMg01no170_l19.b1)MSMg01-170L19.TJ (MSMg01no170_l19.g1)
ACCAG367209AG367210
length745739
length of high quality
(start - end)
316 (44 - 359)246 (77 - 322)
definitionCHROMAT_FILE: MSMg01no170_l19.b1 PHD_FILE: MSMg01no170_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:46 2005CHROMAT_FILE: MSMg01no170_l19.g1 PHD_FILE: MSMg01no170_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTCTCTGCTGCCACCTACCAACTGCACAGCAGGTCAGGTAGCAGAT
GAGCTGATGGCTTCTGTGCCAGGCAGTTCAGGCCGCTCAGCTTGGTGATG
GATGATATGGTCACTGTGTTATACAAGAAAATGCCATGCACTGATGAAGG
GACAAGTCTCCTTAGTAGTCTGGCTGAATTCTAATCATGATCCATCCCCA
TCCTTCATTTCATGAAAACTATGGAAAATAAACAATAACCATAAGGATGC
TCATTCCAAGAAAGAATTATTTTGAGAAGAGAGGGGCTATTTGTTAATTT
GGAGTTTANGATAGCNATCNTAGCANNTTACCTTCAAATCTGGTCCAGTG
AAGATGATCAGACTCATATGATGAAAAAAAAATCTCAGGAGTTAGGGAGG
TAGCAATTTGGAGATTTCTAAGTGGGATGACTCAATTATTAACAGTAGTC
ATTTGGTAGACTTTAGTTCATCATCCGAAATTGTTTTCTTGGCTCTAATA
AGCTGCATTTAAATATATTATTTTCTGTGCCCCCAAATCTTCCATTTCTA
TGATGGGCTCAGAATAGCAAACAACTTATCATTATTCACACTTTGTAAAA
TGTGATGAAAGAAGTATTTAGGAATATTGGACACTTCAAAGTTAAATGGC
TCCCATGATGAGATTAGCACACAGATTCTTACAAATGGCATATTT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGGGCTTGGTAGATCACATCT
TTAACCACAATACTCTAGAGAGATAAACAGGTGGGTCTTTGGGAATTCAA
GGCCAGCTTGATTTACATACTGAGTTCCAGGACAGCCAGAGCTGCACAAC
AGAGAGACCTATCTAAGAAAATAAAGGAAGGAAGGAAGGGAGGGAGGGAG
GGAGGGAGAAAGATGATAACAGGATCCATATTTCTGCTGCCTCCAAAAAA
ACACATCTCACCATTAAGGACAGATTTTTTTTTCATGTAAAATAATGGCA
AAAGGTTTTCATTTTTAGNGTAACTCCAAAGNACAGAATCCCAGATATGT
TTATATTGTTGGAGTTTTTGTTTTTGTTAAAAATTTTAGTTAAAAAATGG
GGGGGGGGGGGGGTTTNTCTTTTTTAAGAAGAAGCTTTTAATTAATTGTT
ATTATTCTAAATATTTGTGTATGGTTATTCTGAGTAAGTAAATAATTTTT
GGACTTGCAATAATGGTATATTACGCTCCTCTTACGATTCCACGATTAGT
TCAATTTAGGACCTTTCTCGTGTTCTACATTTATTACTTCCACTTTTCCT
CTTATCCACGGTTTTTTCATATCAATACGCCGTACCCTTTCACCTTCTAC
ATCTCACTTTATCCCCGTACAACCCTTTATGAATGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_l19.b1 MSMg01no170_l19.b1 CHROMAT_FILE:
MSMg01no170_l19.b1 PHD_FILE: MSMg01no170_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:46 2005
         (316 letters)



>mm_chr3_18270706_18271421
          Length = 716

 Score =  536 bits (277), Expect = e-157
 Identities = 301/313 (96%), Gaps = 8/313 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttctctgctgccacctaccaactgcacagcaggtcaggtagcagatgagctga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattccttctctgctgccacctaccaactgcacagcaggtcaggtagcagatgagctga 454

                                                                       
Query: 65  tggcttctgtgccaggcagttcaggccgctcagcttggtgatggatgatatggtcactgt 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tggcttctgtgccaggaagttcaggccgctcagcttggtgatggatgatatggtcactgt 394

                                                                       
Query: 125 gttatacaagaaaatgccatgcactgatgaagggacaagtctccttagtagtctggctga 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtcatacaagaaaatgccatgcactgatgaagggacaagtctccttagtagtctggctga 334

                                                                       
Query: 185 attctaatcatgatccatccccatccttcatttcatgaaaactatggaaaataaacaata 244
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 333 attctaatcatgatccgtccccatccttcatttcatgaaaactatgaaaaataaacaata 274

                                                                       
Query: 245 accataaggatgctcattccaagaaagaatta----ttttgagaagagaggggctatttg 300
           ||||||||||||||||||||||||||||||||        ||||||||||||||||||||
Sbjct: 273 accataaggatgctcattccaagaaagaattagcag----gagaagagaggggctatttg 218

                        
Query: 301 ttaatttggagtt 313
           |||||||||||||
Sbjct: 217 ttaatttggagtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)