BAC Information

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BAC

Clone NameMSMg01-170O13
Chromosome3 (Build37)
Map Location 18,955,572 - 18,955,782
singlet/doubletsinglet
Overlap genenone
Upstream geneBhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170O13.T7 (MSMg01no170_o13.b1)MSMg01-170O13.TJ (MSMg01no170_o13.g1)
ACCAG367321AG367322
length871732
length of high quality
(start - end)
73 (47 - 119)211 (77 - 287)
definitionCHROMAT_FILE: MSMg01no170_o13.b1 PHD_FILE: MSMg01no170_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:59 2005CHROMAT_FILE: MSMg01no170_o13.g1 PHD_FILE: MSMg01no170_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCGTATGTTATAGTGAGTTAATATGTCTTAAGGTTTTTTGTTGGTT
TGGTTTAGTTTTTTGTTTTTTCGCCCCCCCCNCCCCCCNCCTTTTTCCTT
CCTCCTCCCTTCTTTTTCCTCTCCCCTTGTCCCATTTCCCTCTCTCCTTC
TCCCACATTTCTTCCTTTCCCTCCTCTTCCCCTTCCCTTTCCACTTTTCC
CCCCTCTCTCCTTTCCCTCCCTCCCTTCATTCCCTCCACATGTATTCTCG
GTCGTCCTTCTTACCCTCTCATTTCTTGCCAAACCCATTAATCTTCTTTT
TTTTTCTCCACCACCCATATAAAAAAACCCAAAGAGAAGGAATTTTTGAG
TTAGATTTCCCCAAGGACGANCCCCCCGTGTTTTATTTTGTTTTTTGTTG
AGTGGATGGGGGTGGGGGGCTCCCCCAAAAAAAAAAAAAAAAAAAAAAAT
CCTGGGCGGGGGGGGGGGGGGCTTTCCCCTTCTATATCCCTATACCCTGT
CTCTTACCCTATTCTTCCTTACCTTTACATCCCGACGCCTATTCTTACTA
TATGCCCCCCCCCGCGCGCACCGTCTCCCTTTAGTCAGCCATCGCATCAT
TATACTACATCCCATTATATTTGGCTTGCCGGTTTATTCACGTATTATCC
ACTTCTCATCTTCCGCTCTCCCAAAATCCTTGTCCGCCTCCTCTGCCGAC
TCACCGTCATACATCCCTCGCTCCTCCAATCACCCCGACACACGTCCCCC
GCCCGTCGTGTACCTCGATGGCCCCGCCCACCATACCATTCGCTCTGCTA
CCCATCTCCCTGTCCCTCTCT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTTCTGATGATTACCTTGGAT
CAGATAGGTGGGCCACAGTGATAATGGGGAACTTCACCAGAGAAGGGCAG
CAGCAAGAGTCAGTAGAGGAGACATGATGGGGAAAAGCTGGATGGGGATA
ATGTAAGAAGGGGTAAGGGTGGAGATACTTCCAGAACTGATAAAGTTGAA
GAGGTAGATTGTCCCCTGAAGCTTCCAGAAGGAGTGTAGACCTTCCAATA
CTCTGATTTCTGGAGCGAATATTTTCCTGTACTGTTTAAAGCCACGTACT
CTATGGTTTTTTGATANTTTCCCCAGAACAGACCCCCGGATGTGGGTTTT
TCATCTTACGTGTTTTCTGCCCCCACAAAAAAAAAAAACCTCTGCCCGGG
GCCTTGATTGACCTATCCTCTTTGCCTTTTTAGCACCCTTGCATTTCGAG
TTTCCGCATTTTGTCACTTTGTTGCTTTCTCCTTTCCCCCGCCTCCTTTT
TTGCCCCCCTTTCCCTCCCTTTTCCCCCCCTTTCCTTCTCTTTTCTCCTT
TTCCTTCTCTTTTCTTCTCTTTCCCCTTTTCCTCTCCTCCCTCTTTTCTC
CTCTCCTTCGTCTCTTCGCCCCTTCTTTTCTCTGCTTTTATTTTCTTTTT
TGTTTTTATTCCCCCCCCTTTTCTCCTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_o13.g1 MSMg01no170_o13.g1 CHROMAT_FILE:
MSMg01no170_o13.g1 PHD_FILE: MSMg01no170_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:59 2005
         (211 letters)



>mm_chr3_18955372_18955982
          Length = 611

 Score =  408 bits (211), Expect = e-118
 Identities = 211/211 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcttctgatgattaccttggatcagataggtgggccacagtgataatggggaacttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttgcttctgatgattaccttggatcagataggtgggccacagtgataatggggaacttca 352

                                                                       
Query: 61  ccagagaagggcagcagcaagagtcagtagaggagacatgatggggaaaagctggatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ccagagaagggcagcagcaagagtcagtagaggagacatgatggggaaaagctggatggg 292

                                                                       
Query: 121 gataatgtaagaaggggtaagggtggagatacttccagaactgataaagttgaagaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gataatgtaagaaggggtaagggtggagatacttccagaactgataaagttgaagaggta 232

                                          
Query: 181 gattgtcccctgaagcttccagaaggagtgt 211
           |||||||||||||||||||||||||||||||
Sbjct: 231 gattgtcccctgaagcttccagaaggagtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)